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Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds

Ji, Yanzhu (author)
Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China.;Field Museum Nat Hist, Negaunee Integrat Res Ctr, Chicago, IL 60605 USA.
Feng, Shaohong (author)
Beishan Ind Zone, BGI Shenzhen, Shenzhen 518083, Peoples R China.;Zhejiang Univ, Innovat Ctr Yangtze River Delta, Future Hlth Lab, Jiaxing 314100, Peoples R China.;Zhejiang Univ, Evolutionary & Organismal Biol Res Ctr, Sch Med, Hangzhou, Peoples R China.;Zhejiang Univ, Liangzhu Lab, Med Ctr, Hangzhou 311121, Peoples R China.
Wu, Lei (author)
Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China.;Univ Chinese Acad Sci, Beijing 100049, Peoples R China.
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Fang, Qi (author)
Beishan Ind Zone, BGI Shenzhen, Shenzhen 518083, Peoples R China.;Univ Copenhagen, Villum Ctr Biodivers Genom, Dept Biol, Sect Ecol & Evolut, DK-2200 Copenhagen, Denmark.
Bruniche-Olsen, Anna (author)
Univ Copenhagen, Dept Biol, Sect Computat & RNA Biol, DK-2200 Copenhagen, Denmark.
DeWoody, J. Andrew (author)
Purdue Univ, Dept Forestry & Nat Resources, W Lafayette, IN 47906 USA.;Purdue Univ, Dept Biol Sci, W Lafayette, IN 47906 USA.
Cheng, Yalin (author)
Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China.
Zhang, Dezhi (author)
Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China.
Hao, Yan (author)
Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China.
Song, Gang (author)
Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China.
Qu, Yanhua (author)
Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China.
Suh, Alexander (author)
Uppsala universitet,Systematisk biologi,Univ East Anglia, Sch Biol Sci Organism & Environm, Norwich NR4 7TU, Norfolk, England.;Uppsala Univ, Evolutionary Biol Ctr EBC, Dept Organismal Biol, Sci Life Lab,Systemat Biol, SE-75236 Uppsala, Sweden.
Zhang, Guojie (author)
Zhejiang Univ, Innovat Ctr Yangtze River Delta, Future Hlth Lab, Jiaxing 314100, Peoples R China.;Zhejiang Univ, Evolutionary & Organismal Biol Res Ctr, Sch Med, Hangzhou, Peoples R China.;Zhejiang Univ, Liangzhu Lab, Med Ctr, Hangzhou 311121, Peoples R China.;Univ Copenhagen, Villum Ctr Biodivers Genom, Dept Biol, Sect Ecol & Evolut, DK-2200 Copenhagen, Denmark.;Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming 650223, Yunnan, Peoples R China.;Zhejiang Univ, Womens Hosp, Sch Med, Hangzhou 310006, Peoples R China.
Hackett, Shannon J. (author)
Field Museum Nat Hist, Negaunee Integrat Res Ctr, Chicago, IL 60605 USA.
Lei, Fumin (author)
Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China.;Univ Chinese Acad Sci, Beijing 100049, Peoples R China.;Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming 650201, Yunnan, Peoples R China.
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Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China;Field Museum Nat Hist, Negaunee Integrat Res Ctr, Chicago, IL 60605 USA. Beishan Ind Zone, BGI Shenzhen, Shenzhen 518083, Peoples R China.;Zhejiang Univ, Innovat Ctr Yangtze River Delta, Future Hlth Lab, Jiaxing 314100, Peoples R China.;Zhejiang Univ, Evolutionary & Organismal Biol Res Ctr, Sch Med, Hangzhou, Peoples R China.;Zhejiang Univ, Liangzhu Lab, Med Ctr, Hangzhou 311121, Peoples R China. (creator_code:org_t)
American Association for the Advancement of Science (AAAS), 2022
2022
English.
In: Science Advances. - : American Association for the Advancement of Science (AAAS). - 2375-2548. ; 8:35
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  • Journal article (peer-reviewed)
Abstract Subject headings
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  • The rate of mutation accumulation in germline cells can be affected by cell replication and/or DNA damage, which are further related to life history traits such as generation time and body mass. Leveraging the existing datasets of 233 neoavian bird species, here, we investigated whether generation time and body mass contribute to the interspecific variation of orthologous microsatellite length, transposable element (TE) length, and deletion length and how these genomic attributes affect genome sizes. In nonpasserines, we found that generation time is correlated to both orthologous microsatellite length and TE length, and body mass is negatively correlated to DNA deletions. These patterns are less pronounced in passerines. In all species, we found that DNA deletions relate to genome size similarly as TE length, suggesting a role of body mass dynamics in genome evolution. Our results indicate that generation time and body mass shape the evolution of genomic attributes in neoavian birds.

Subject headings

NATURVETENSKAP  -- Biologi -- Evolutionsbiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Evolutionary Biology (hsv//eng)

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