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Sökning: WFRF:(Hes Frederik J) > (2015) > Recurrent Coding Se...

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FältnamnIndikatorerMetadata
00005534naa a2201033 4500
001oai:lup.lub.lu.se:ec776600-f545-498e-8ad3-edbc8cae7f15
003SwePub
008160401s2015 | |||||||||||000 ||eng|
024a https://lup.lub.lu.se/record/82361242 URI
024a https://doi.org/10.1038/srep162862 DOI
040 a (SwePub)lu
041 a engb eng
042 9 SwePub
072 7a art2 swepub-publicationtype
072 7a ref2 swepub-contenttype
100a Timofeeva, Maria N4 aut
2451 0a Recurrent Coding Sequence Variation Explains Only A Small Fraction of the Genetic Architecture of Colorectal Cancer.
264 c 2015-11-10
264 1b Springer Science and Business Media LLC,c 2015
520 a Whilst common genetic variation in many non-coding genomic regulatory regions are known to impart risk of colorectal cancer (CRC), much of the heritability of CRC remains unexplained. To examine the role of recurrent coding sequence variation in CRC aetiology, we genotyped 12,638 CRCs cases and 29,045 controls from six European populations. Single-variant analysis identified a coding variant (rs3184504) in SH2B3 (12q24) associated with CRC risk (OR = 1.08, P = 3.9 × 10(-7)), and novel damaging coding variants in 3 genes previously tagged by GWAS efforts; rs16888728 (8q24) in UTP23 (OR = 1.15, P = 1.4 × 10(-7)); rs6580742 and rs12303082 (12q13) in FAM186A (OR = 1.11, P = 1.2 × 10(-7) and OR = 1.09, P = 7.4 × 10(-8)); rs1129406 (12q13) in ATF1 (OR = 1.11, P = 8.3 × 10(-9)), all reaching exome-wide significance levels. Gene based tests identified associations between CRC and PCDHGA genes (P < 2.90 × 10(-6)). We found an excess of rare, damaging variants in base-excision (P = 2.4 × 10(-4)) and DNA mismatch repair genes (P = 6.1 × 10(-4)) consistent with a recessive mode of inheritance. This study comprehensively explores the contribution of coding sequence variation to CRC risk, identifying associations with coding variation in 4 genes and PCDHG gene cluster and several candidate recessive alleles. However, these findings suggest that recurrent, low-frequency coding variants account for a minority of the unexplained heritability of CRC.
650 7a MEDICIN OCH HÄLSOVETENSKAPx Klinisk medicinx Cancer och onkologi0 (SwePub)302032 hsv//swe
650 7a MEDICAL AND HEALTH SCIENCESx Clinical Medicinex Cancer and Oncology0 (SwePub)302032 hsv//eng
700a Kinnersley, Ben4 aut
700a Farrington, Susan M4 aut
700a Whiffin, Nicola4 aut
700a Palles, Claire4 aut
700a Svinti, Victoria4 aut
700a Lloyd, Amy4 aut
700a Gorman, Maggie4 aut
700a Ooi, Li-Yin4 aut
700a Hosking, Fay4 aut
700a Barclay, Ella4 aut
700a Zgaga, Lina4 aut
700a Dobbins, Sara4 aut
700a Martin, Lynn4 aut
700a Theodoratou, Evropi4 aut
700a Broderick, Peter4 aut
700a Tenesa, Albert4 aut
700a Smillie, Claire4 aut
700a Grimes, Graeme4 aut
700a Hayward, Caroline4 aut
700a Campbell, Archie4 aut
700a Porteous, David4 aut
700a Deary, Ian J4 aut
700a Harris, Sarah E4 aut
700a Northwood, Emma L4 aut
700a Barrett, Jennifer H4 aut
700a Smith, Gillian4 aut
700a Wolf, Roland4 aut
700a Forman, David4 aut
700a Morreau, Hans4 aut
700a Ruano, Dina4 aut
700a Tops, Carli4 aut
700a Wijnen, Juul4 aut
700a Schrumpf, Melanie4 aut
700a Boot, Arnoud4 aut
700a Vasen, Hans F A4 aut
700a Hes, Frederik J4 aut
700a van Wezel, Tom4 aut
700a Franke, Andre4 aut
700a Lieb, Wolgang4 aut
700a Schafmayer, Clemens4 aut
700a Hampe, Jochen4 aut
700a Buch, Stephan4 aut
700a Propping, Peter4 aut
700a Hemminki, Kariu Lund University,Lunds universitet,Allmänmedicin och klinisk epidemiologi,Forskargrupper vid Lunds universitet,Family Medicine and Clinical Epidemiology,Lund University Research Groups4 aut0 (Swepub:lu)med-khk
700a Försti, Astau Lund University,Lunds universitet,Allmänmedicin och klinisk epidemiologi,Forskargrupper vid Lunds universitet,Family Medicine and Clinical Epidemiology,Lund University Research Groups4 aut0 (Swepub:lu)med-asf
700a Westers, Helga4 aut
700a Hofstra, Robert4 aut
700a Pinheiro, Manuela4 aut
700a Pinto, Carla4 aut
700a Teixeira, Manuel4 aut
700a Ruiz-Ponte, Clara4 aut
700a Fernández-Rozadilla, Ceres4 aut
700a Carracedo, Angel4 aut
700a Castells, Antoni4 aut
700a Castellví-Bel, Sergi4 aut
700a Campbell, Harry4 aut
700a Bishop, D Timothy4 aut
700a Tomlinson, Ian P M4 aut
700a Dunlop, Malcolm G4 aut
700a Houlston, Richard S4 aut
710a Allmänmedicin och klinisk epidemiologib Forskargrupper vid Lunds universitet4 org
773t Scientific Reportsd : Springer Science and Business Media LLCg 5q 5x 2045-2322
856u http://www.ncbi.nlm.nih.gov/pubmed/26553438?dopt=Abstracty FULLTEXT
856u http://dx.doi.org/10.1038/srep16286x freey FULLTEXT
856u https://www.nature.com/articles/srep16286.pdf
8564 8u https://lup.lub.lu.se/record/8236124
8564 8u https://doi.org/10.1038/srep16286

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