Sökning: WFRF:(Mahony Shaun) > Wadelius Claes > ORegAnno :
Fältnamn | Indikatorer | Metadata |
---|---|---|
000 | 03666naa a2200649 4500 | |
001 | oai:DiVA.org:uu-112994 | |
003 | SwePub | |
008 | 100125s2008 | |||||||||||000 ||eng| | |
024 | 7 | a https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-1129942 URI |
024 | 7 | a https://doi.org/10.1093/nar/gkm9672 DOI |
040 | a (SwePub)uu | |
041 | a engb eng | |
042 | 9 SwePub | |
072 | 7 | a ref2 swepub-contenttype |
072 | 7 | a art2 swepub-publicationtype |
100 | 1 | a Griffith, Obi L.4 aut |
245 | 1 0 | a ORegAnno :b an open-access community-driven resource for regulatory annotation |
264 | c 2007-12-23 | |
264 | 1 | b Oxford University Press (OUP),c 2008 |
338 | a print2 rdacarrier | |
520 | a ORegAnno is an open-source, open-access database and literature curation system for community-based annotation of experimentally identified DNA regulatory regions, transcription factor binding sites and regulatory variants. The current release comprises 30 145 records curated from 922 publications and describing regulatory sequences for over 3853 genes and 465 transcription factors from 19 species. A new feature called the publication queue allows users to input relevant papers from scientific literature as targets for annotation. The queue contains 4438 gene regulation papers entered by experts and another 54 351 identified by text-mining methods. Users can enter or check out papers from the queue for manual curation using a series of user-friendly annotation pages. A typical record entry consists of species, sequence type, sequence, target gene, binding factor, experimental outcome and one or more lines of experimental evidence. An evidence ontology was developed to describe and categorize these experiments. Records are cross-referenced to Ensembl or Entrez gene identifiers, PubMed and dbSNP and can be visualized in the Ensembl or UCSC genome browsers. All data are freely available through search pages, XML data dumps or web services at: http://www.oreganno.org. | |
653 | a MEDICINE | |
653 | a MEDICIN | |
700 | 1 | a Montgomery, Stephen B.4 aut |
700 | 1 | a Bernier, Bridget4 aut |
700 | 1 | a Chu, Bryan4 aut |
700 | 1 | a Kasaian, Katayoon4 aut |
700 | 1 | a Aerts, Stein4 aut |
700 | 1 | a Mahony, Shaun4 aut |
700 | 1 | a Sleumer, Monica C.4 aut |
700 | 1 | a Bilenky, Mikhail4 aut |
700 | 1 | a Haeussler, Maximilian4 aut |
700 | 1 | a Griffith, Malachi4 aut |
700 | 1 | a Gallo, Steven M.4 aut |
700 | 1 | a Giardine, Belinda4 aut |
700 | 1 | a Hooghe, Bart4 aut |
700 | 1 | a Van Loo, Peter4 aut |
700 | 1 | a Blanco, Enrique4 aut |
700 | 1 | a Ticoll, Amy4 aut |
700 | 1 | a Lithwick, Stuart4 aut |
700 | 1 | a Portales-Casamar, Elodie4 aut |
700 | 1 | a Donaldson, Ian J.4 aut |
700 | 1 | a Robertson, Gordon4 aut |
700 | 1 | a Wadelius, Claesu Uppsala universitet,Institutionen för genetik och patologi4 aut0 (Swepub:uu)claeswad |
700 | 1 | a De Bleser, Pieter4 aut |
700 | 1 | a Vlieghe, Dominique4 aut |
700 | 1 | a Halfon, Marc S.4 aut |
700 | 1 | a Wasserman, Wyeth4 aut |
700 | 1 | a Hardison, Ross4 aut |
700 | 1 | a Bergman, Casey M.4 aut |
700 | 1 | a Jones, Steven J. M.4 aut |
710 | 2 | a Uppsala universitetb Institutionen för genetik och patologi4 org |
773 | 0 | t Nucleic Acids Researchd : Oxford University Press (OUP)g 36:Database issue, s. D107-D113q 36:Database issue<D107-D113x 0305-1048x 1362-4962 |
856 | 4 | u http://www.oreganno.org |
856 | 4 | u https://academic.oup.com/nar/article-pdf/36/suppl_1/D107/7635948/gkm967.pdf |
856 | 4 8 | u https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-112994 |
856 | 4 8 | u https://doi.org/10.1093/nar/gkm967 |
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