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Electronic structure study of the bases in DNA duplexes by in situ photon-in/photon-out soft X-ray spectroscopy

Guo, J. -H (author)
Kashtanov, Stepan (author)
KTH,Teoretisk kemi
Söderström, Johan, 1978- (author)
Uppsala universitet,Molekyl- och kondenserade materiens fysik,Yt- och gränsskiktsvetenskap
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Glans, P. -A (author)
West, M. (author)
Learmonth, T. (author)
Chiou, J. -W (author)
Luo, Yi (author)
KTH,Teoretisk kemi
Nordgren, J. (author)
Uppsala universitet,Mjukröntgenfysik
Smith, K. (author)
Pong, W. -F (author)
Cheng, H. (author)
Griffiss, J. M. (author)
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 (creator_code:org_t)
Elsevier BV, 2010
2010
English.
In: Journal of Electron Spectroscopy and Related Phenomena. - : Elsevier BV. - 0368-2048 .- 1873-2526. ; 181:2-3, s. 197-201
  • Journal article (peer-reviewed)
Abstract Subject headings
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  • Understanding protein functionality is of fundamental importance in biochemistry. Soft X-ray transitions, where the core-level vacancies are filled by the valence-orbital electrons, give direct information about the chemical bonding. Soft X-ray absorption and emission study of poly(dG) -poly(dC) in aqueous solutions can elucidate the relation between the structure and functionality of proteins. We report the N K-edge soft X-ray absorption (XAS) and resonant soft X-ray emission spectroscopy (XES) to characterize the electronic structure near the Fermi level of DNA duplexes to specify the charge migration mechanism. Since N atoms are included in only bases in DNA duplexes, the XES spectra excited from N Is to unoccupied states purely extract the electronic orbital features of the bases in DNA. The fact that N atoms in different bonding environments form well-defined structure has been determined. The experimental findings provide the evidence for the charge-hopping and/or charge-transfer effects in understanding of electric conduction in DNA duplexes when electrons pass through the pi* states of DNA bases.

Subject headings

NATURVETENSKAP  -- Kemi -- Analytisk kemi (hsv//swe)
NATURAL SCIENCES  -- Chemical Sciences -- Analytical Chemistry (hsv//eng)
NATURVETENSKAP  -- Fysik -- Atom- och molekylfysik och optik (hsv//swe)
NATURAL SCIENCES  -- Physical Sciences -- Atom and Molecular Physics and Optics (hsv//eng)
NATURVETENSKAP  -- Fysik (hsv//swe)
NATURAL SCIENCES  -- Physical Sciences (hsv//eng)

Keyword

Soft X-ray absorption and emission spectroscopy
RIXS
Electronic structure
DNA
G-C pair
A-T pair
Spectroscopy
Spektroskopi
Physics

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