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TissUUmaps :
TissUUmaps : interactive visualization of large-scale spatial gene expression and tissue morphology data
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- Solorzano, Leslie, 1989- (author)
- Uppsala universitet,Avdelningen för visuell information och interaktion,Science for Life Laboratory, SciLifeLab
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- Partel, Gabriele, 1988- (author)
- Uppsala universitet,Avdelningen för visuell information och interaktion,Science for Life Laboratory, SciLifeLab
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- Wählby, Carolina, professor, 1974- (author)
- Uppsala universitet,Science for Life Laboratory, SciLifeLab,Avdelningen för visuell information och interaktion
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(creator_code:org_t)
- 2020-05-25
- 2020
- English.
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In: Bioinformatics. - : OXFORD UNIV PRESS. - 1367-4803 .- 1367-4811 .- 1460-2059. ; 36:15, s. 4363-4365
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Abstract
Subject headings
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- Motivation: Visual assessment of scanned tissue samples and associated molecular markers, such as gene expression, requires easy interactive inspection at multiple resolutions. This requires smart handling of image pyramids and efficient distribution of different types of data across several levels of detail.Results: We present TissUUmaps, enabling fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used both as a web service or locally in any computer, and regions of interest as well as local statistics can be extracted and shared among users.
Subject headings
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
- NATURVETENSKAP -- Data- och informationsvetenskap -- Datavetenskap (hsv//swe)
- NATURAL SCIENCES -- Computer and Information Sciences -- Computer Sciences (hsv//eng)
Publication and Content Type
- ref (subject category)
- art (subject category)
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