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The complete mitochondrial genome of the copepod Calanus glacialis
- Choquet, Marvin (author)
- Monteiro, Homére J. Alves (author)
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- Bengtsson-Palme, Johan, 1985 (author)
- Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för infektionssjukdomar,Institute of Biomedicine, Department of Infectious Medicine
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- Hoarau, Galice (author)
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- (creator_code:org_t)
- 2017-08-06
- 2017
- English.
- In: Mitochondrial DNA Part B. - : Informa UK Limited. - 2380-2359. ; 2:2, s. 506-507
- Journal article (peer-reviewed)
Abstract
Subject headings
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- Calanus glacialis, a marine planktonic copepod, is a keystone species in the Arctic Ocean. In this study, we shotgun sequenced the total DNA of one C. glacialis individual, using the NextSeq® Illumina platform, in order to determine its mitochondrial genome sequence. We successfully assembled and annotated this 20,674bp long sequence, which included 13 protein-coding genes, 2 rRNA genes and 22 tRNA genes. Common gene-coding regions of 19 other species were used to reconstruct a phylogenetic tree, using mitogenomes of the phylogenetically closest copepods available. The new resource described here constitutes a tool of interest for better understanding the structure and dynamics of C. glacialis populations.
Subject headings
- NATURVETENSKAP -- Biologi -- Ekologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Ecology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Biokemi och molekylärbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Biochemistry and Molecular Biology (hsv//eng)
Keyword
- Calanus glacialis
- copepod
- mitochondrion
- mitogenome
- zooplankton
Publication and Content Type
- ref (subject category)
- art (subject category)
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