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Targeted Capture of...
Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae
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Loiseau, O. (author)
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Oliyares, I. (author)
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Paris, M. (author)
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de La Harpe, M. (author)
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Weigand, A. (author)
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Koubinova, D. (author)
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Rolland, J. (author)
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- Bacon, Christine D. (author)
- Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences
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Balslev, H. (author)
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Borchsenius, F. (author)
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Cano, A. (author)
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Couvreur, T. L. P. (author)
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Delnatte, C. (author)
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Fardin, F. (author)
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Gayot, M. (author)
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Mejia, F. (author)
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Mota-Machado, T. (author)
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Ferret, M. (author)
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Roncal, J. (author)
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Sanin, M. J. (author)
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Stauffer, F. (author)
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Lexer, C. (author)
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Kessler, M. (author)
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Salamin, N. (author)
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(creator_code:org_t)
- 2019-07-12
- 2019
- English.
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In: Frontiers in Plant Science. - : Frontiers Media SA. - 1664-462X. ; 10
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Abstract
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- The tribe Geonomateae is a widely distributed group of 103 species of Neotropical palms which contains six ecologically important understory or subcanopy genera. Although it has been the focus of many studies, our understanding of the evolutionary history of this group, and in particular of the taxonomically complex genus Geonoma, is far from complete due to a lack of molecular data. Specifically, the previous Sanger sequencing-based studies used a few informative characters and partial sampling. To overcome these limitations, we used a recently developed Arecaceae-specific target capture bait set to undertake a phylogenomic analysis of the tribe Geonomateae. We sequenced 3,988 genomic regions for 85% of the species of the tribe, including 84% of the species of the largest genus, Geonoma. Phylogenetic relationships were inferred using both concatenation and coalescent methods. Overall, our phylogenetic tree is highly supported and congruent with taxonomic delimitations although several morphological taxa were revealed to be non-monophyletic. It is the first time that such a large genomic dataset is provided for an entire tribe within the Arecaceae. Our study lays the groundwork not only for detailed macro- and micro-evolutionary studies within the group, but also sets a workflow for understanding other species complexes across the tree of life.
Subject headings
- NATURVETENSKAP -- Biologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences (hsv//eng)
Keyword
- Arecaceae
- Geonoma
- Neotropics
- phylogenetic informativeness
- phylogenomics
- species complexes
- macrostachys arecaceae varieties
- genome sequence
- dated phylogeny
- DNA-sequences
- genic view
- revision
- forest
- tree
- arecoideae
- biogeography
- Plant Sciences
Publication and Content Type
- ref (subject category)
- art (subject category)
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To the university's database
- By the author/editor
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Loiseau, O.
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Oliyares, I.
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Paris, M.
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de La Harpe, M.
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Weigand, A.
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Koubinova, D.
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show more...
-
Rolland, J.
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Bacon, Christine ...
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Balslev, H.
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Borchsenius, F.
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Cano, A.
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Couvreur, T. L. ...
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Delnatte, C.
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Fardin, F.
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Gayot, M.
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Mejia, F.
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Mota-Machado, T.
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Ferret, M.
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Roncal, J.
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Sanin, M. J.
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Stauffer, F.
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Lexer, C.
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Kessler, M.
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Salamin, N.
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show less...
- About the subject
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
- Articles in the publication
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Frontiers in Pla ...
- By the university
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University of Gothenburg