Sökning: onr:"swepub:oai:DiVA.org:umu-190416" > Centromere-Specific...
Fältnamn | Indikatorer | Metadata |
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000 | 10588naa a2200685 4500 | |
001 | oai:DiVA.org:umu-190416 | |
003 | SwePub | |
008 | 211216s2021 | |||||||||||000 ||eng| | |
024 | 7 | a https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-1904162 URI |
024 | 7 | a https://doi.org/10.3389/fpls.2021.7663892 DOI |
040 | a (SwePub)umu | |
041 | a engb eng | |
042 | 9 SwePub | |
072 | 7 | a ref2 swepub-contenttype |
072 | 7 | a art2 swepub-publicationtype |
100 | 1 | a Liu, Huiu National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
245 | 1 0 | a Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance |
264 | c 2021-11-22 | |
264 | 1 | b Frontiers Media S.A.c 2021 |
338 | a electronic2 rdacarrier | |
520 | a In-depth genome characterization is still lacking for most of biofuel crops, especially for centromeres, which play a fundamental role during nuclear division and in the maintenance of genome stability. This study applied long-read sequencing technologies to assemble a highly contiguous genome for yellowhorn (Xanthoceras sorbifolium), an oil-producing tree, and conducted extensive comparative analyses to understand centromere structure and evolution, and fatty acid biosynthesis. We produced a reference-level genome of yellowhorn, ∼470 Mb in length with ∼95% of contigs anchored onto 15 chromosomes. Genome annotation identified 22,049 protein-coding genes and 65.7% of the genome sequence as repetitive elements. Long terminal repeat retrotransposons (LTR-RTs) account for ∼30% of the yellowhorn genome, which is maintained by a moderate birth rate and a low removal rate. We identified the centromeric regions on each chromosome and found enrichment of centromere-specific retrotransposons of LINE1 and Gypsy in these regions, which have evolved recently (∼0.7 MYA). We compared the genomes of three cultivars and found frequent inversions. We analyzed the transcriptomes from different tissues and identified the candidate genes involved in very-long-chain fatty acid biosynthesis and their expression profiles. Collinear block analysis showed that yellowhorn shared the gamma (γ) hexaploidy event with Vitis vinifera but did not undergo any further whole-genome duplication. This study provides excellent genomic resources for understanding centromere structure and evolution and for functional studies in this important oil-producing plant. | |
650 | 7 | a NATURVETENSKAPx Biologix Botanik0 (SwePub)106072 hsv//swe |
650 | 7 | a NATURAL SCIENCESx Biological Sciencesx Botany0 (SwePub)106072 hsv//eng |
650 | 7 | a NATURVETENSKAPx Biologix Biokemi och molekylärbiologi0 (SwePub)106022 hsv//swe |
650 | 7 | a NATURAL SCIENCESx Biological Sciencesx Biochemistry and Molecular Biology0 (SwePub)106022 hsv//eng |
653 | a centromere | |
653 | a Gypsy | |
653 | a LINE1 | |
653 | a very-long-chain fatty acid | |
653 | a yellowhorn | |
653 | a biology | |
653 | a biologi | |
700 | 1 | a Yan, Xue-Meiu National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
700 | 1 | a Wang, Xin-Ruiu National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
700 | 1 | a Zhang, Dong-Xuu Protected Agricultural Technology, R&D Center, Shanxi Datong University, Datong, China4 aut |
700 | 1 | a Zhou, Qingyuanu Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, China4 aut |
700 | 1 | a Shi, Tian-Leu National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
700 | 1 | a Jia, Kai-Huau National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
700 | 1 | a Tian, Xue-Chanu National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
700 | 1 | a Zhou, Shan-Shanu National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
700 | 1 | a Zhang, Ren-Gangu Department of Bioinformatics, Ori (Shandong) Gene Science and Technology Co., Ltd, Weifang, China4 aut |
700 | 1 | a Yun, Quan-Zhengu Department of Bioinformatics, Ori (Shandong) Gene Science and Technology Co., Ltd, Weifang, China4 aut |
700 | 1 | a Wang, Qingu Key Laboratory of Forest Ecology and Environment of the National Forestry and Grassland Administration, Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing, China4 aut |
700 | 1 | a Xiang, Qiuhongu National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
700 | 1 | a Mannapperuma, Chanaka,d 1982-u Umeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)4 aut0 (Swepub:umu)mach0027 |
700 | 1 | a Van Zalen, Elenau Umeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)4 aut0 (Swepub:umu)elva0027 |
700 | 1 | a Street, Nathaniel R.,d 1979-u Umeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)4 aut0 (Swepub:umu)rona0006 |
700 | 1 | a Porth, Ilgau Départment des Sciences du Bois et de la Forêt, Faculté de Foresterie, de Géographie et de Géomatique, Université Laval Québec, Quebec City, QC, Canada4 aut |
700 | 1 | a El-Kassaby, Yousry A.u Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, BC, Vancouver, Canada4 aut |
700 | 1 | a Zhao, Weiu Umeå universitet,Institutionen för ekologi, miljö och geovetenskap,Umeå Plant Science Centre (UPSC),National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut0 (Swepub:umu)zhwe0002 |
700 | 1 | a Wang, Xiao-Ruu Umeå universitet,Institutionen för ekologi, miljö och geovetenskap,Umeå Plant Science Centre (UPSC),National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut0 (Swepub:umu)xiwa0003 |
700 | 1 | a Guan, Wenbinu National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
700 | 1 | a Mao, Jian-Fengu National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China4 aut |
710 | 2 | a National Engineering Laboratory for Tree Breeding, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, School of Ecology and Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, Chinab Protected Agricultural Technology, R&D Center, Shanxi Datong University, Datong, China4 org |
773 | 0 | t Frontiers in Plant Scienced : Frontiers Media S.A.g 12q 12x 1664-462X |
856 | 4 | u https://doi.org/10.3389/fpls.2021.766389y Fulltext |
856 | 4 | u https://umu.diva-portal.org/smash/get/diva2:1620663/FULLTEXT01.pdfx primaryx Raw objecty fulltext:print |
856 | 4 | u https://www.frontiersin.org/articles/10.3389/fpls.2021.766389/pdf |
856 | 4 8 | u https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-190416 |
856 | 4 8 | u https://doi.org/10.3389/fpls.2021.766389 |
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