Sökning: onr:"swepub:oai:lup.lub.lu.se:941ca49e-9b75-4f4b-b2af-64aa170d33be" > Breast cancer genom...
Fältnamn | Indikatorer | Metadata |
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000 | 06612naa a2200901 4500 | |
001 | oai:lup.lub.lu.se:941ca49e-9b75-4f4b-b2af-64aa170d33be | |
003 | SwePub | |
008 | 161004s2016 | |||||||||||000 ||eng| | |
024 | 7 | a https://lup.lub.lu.se/record/941ca49e-9b75-4f4b-b2af-64aa170d33be2 URI |
024 | 7 | a https://doi.org/10.1038/ncomms129102 DOI |
040 | a (SwePub)lu | |
041 | a engb eng | |
042 | 9 SwePub | |
072 | 7 | a art2 swepub-publicationtype |
072 | 7 | a ref2 swepub-contenttype |
100 | 1 | a Smid, Marcelu Erasmus University Rotterdam4 aut |
245 | 1 0 | a Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration |
264 | c 2016-09-26 | |
264 | 1 | b Springer Science and Business Media LLC,c 2016 |
520 | a A recent comprehensive whole genome analysis of a large breast cancer cohort was used to link known and novel drivers and substitution signatures to the transcriptome of 266 cases. Here, we validate that subtype-specific aberrations show concordant expression changes for, for example, TP53, PIK3CA, PTEN, CCND1 and CDH1. We find that CCND3 expression levels do not correlate with amplification, while increased GATA3 expression in mutant GATA3 cancers suggests GATA3 is an oncogene. In luminal cases the total number of substitutions, irrespective of type, associates with cell cycle gene expression and adverse outcome, whereas the number of mutations of signatures 3 and 13 associates with immune-response specific gene expression, increased numbers of tumour-infiltrating lymphocytes and better outcome. Thus, while earlier reports imply that the sheer number of somatic aberrations could trigger an immune-response, our data suggests that substitutions of a particular type are more effective in doing so than others. | |
650 | 7 | a MEDICIN OCH HÄLSOVETENSKAPx Medicinska och farmaceutiska grundvetenskaperx Medicinsk genetik0 (SwePub)301072 hsv//swe |
650 | 7 | a MEDICAL AND HEALTH SCIENCESx Basic Medicinex Medical Genetics0 (SwePub)301072 hsv//eng |
650 | 7 | a MEDICIN OCH HÄLSOVETENSKAPx Medicinska och farmaceutiska grundvetenskaperx Cell- och molekylärbiologi0 (SwePub)301082 hsv//swe |
650 | 7 | a MEDICAL AND HEALTH SCIENCESx Basic Medicinex Cell and Molecular Biology0 (SwePub)301082 hsv//eng |
650 | 7 | a MEDICIN OCH HÄLSOVETENSKAPx Klinisk medicinx Cancer och onkologi0 (SwePub)302032 hsv//swe |
650 | 7 | a MEDICAL AND HEALTH SCIENCESx Clinical Medicinex Cancer and Oncology0 (SwePub)302032 hsv//eng |
700 | 1 | a Rodríguez-González, F Germánu Erasmus University Rotterdam4 aut |
700 | 1 | a Sieuwerts, Anieta Mu Erasmus University Rotterdam4 aut |
700 | 1 | a Salgado, Robertou Université Libre de Bruxelles (ULB)4 aut |
700 | 1 | a Prager-Van der Smissen, Wendy J Cu Erasmus University Rotterdam4 aut |
700 | 1 | a Vlugt-Daane, Michelle van deru Erasmus University Rotterdam4 aut |
700 | 1 | a van Galen, Anneu Erasmus University Rotterdam4 aut |
700 | 1 | a Nik-Zainal, Serenau Wellcome Trust Sanger Institute4 aut |
700 | 1 | a Staaf, Johanu Lund University,Lunds universitet,Bröstcancer-genetik,Sektion I,Institutionen för kliniska vetenskaper, Lund,Medicinska fakulteten,Breastcancer-genetics,Section I,Department of Clinical Sciences, Lund,Faculty of Medicine4 aut0 (Swepub:lu)onk-jst |
700 | 1 | a Brinkman, Arie Bu Radboud University Nijmegen4 aut |
700 | 1 | a van de Vijver, Marc Ju Academic Medical Center of University of Amsterdam (AMC)4 aut |
700 | 1 | a Richardson, Andrea Lu Brigham and Women's Hospital / Harvard Medical School4 aut |
700 | 1 | a Fatima, Aquilau Erasmus University Rotterdam4 aut |
700 | 1 | a Berentsen, Kimu Radboud University Nijmegen4 aut |
700 | 1 | a Butler, Adamu Wellcome Trust Sanger Institute4 aut |
700 | 1 | a Martin, Sanchau Wellcome Trust Sanger Institute4 aut |
700 | 1 | a Davies, Helen Ru Wellcome Trust Sanger Institute4 aut |
700 | 1 | a Debets, Renou Erasmus University Rotterdam4 aut |
700 | 1 | a Gelder, Marion E Meijer-Vanu Erasmus University Rotterdam4 aut |
700 | 1 | a van Deurzen, Carolien H Mu Erasmus University Rotterdam4 aut |
700 | 1 | a MacGrogan, Gaëtanu Institut Bergoníe4 aut |
700 | 1 | a Van den Eynden, Gert G G Mu University of Antwerp4 aut |
700 | 1 | a Purdie, Colinu Ninewells Hospital and Medical School4 aut |
700 | 1 | a Thompson, Alastair Mu Ninewells Hospital and Medical School4 aut |
700 | 1 | a Caldas, Carlosu University of Cambridge4 aut |
700 | 1 | a Span, Paul Nu Radboud University Nijmegen4 aut |
700 | 1 | a Simpson, Peter Tu University of Queensland4 aut |
700 | 1 | a Lakhani, Sunil Ru University of Queensland4 aut |
700 | 1 | a Van Laere, Stevenu University of Antwerp4 aut |
700 | 1 | a Desmedt, Christineu Université Libre de Bruxelles (ULB)4 aut |
700 | 1 | a Ringnér, Markusu Lund University,Lunds universitet,Bröstcancer-genetik,Sektion I,Institutionen för kliniska vetenskaper, Lund,Medicinska fakulteten,Breastcancer-genetics,Section I,Department of Clinical Sciences, Lund,Faculty of Medicine4 aut0 (Swepub:lu)thep-mri |
700 | 1 | a Tommasi, Stefaniau Istituto Tumori 'Giovanni Paolo II'4 aut |
700 | 1 | a Eyford, Jorunnu University of Iceland4 aut |
700 | 1 | a Broeks, Annegienu Netherlands Cancer Institute4 aut |
700 | 1 | a Vincent-Salomon, Anneu Curie Institute, Paris4 aut |
700 | 1 | a Futreal, P Andrewu University of Texas4 aut |
700 | 1 | a Knappskog, Stianu University of Bergen4 aut |
700 | 1 | a King, Tariu Memorial Sloan-Kettering Cancer Center4 aut |
700 | 1 | a Thomas, Gillesu Centre Léon Bérard4 aut |
700 | 1 | a Viari, Alainu Centre Léon Bérard4 aut |
700 | 1 | a Langerød, Anitau Oslo university hospital4 aut |
700 | 1 | a Børresen-Dale, Anne-Liseu Oslo university hospital4 aut |
700 | 1 | a Birney, Ewanu European Bioinformatics Institute4 aut |
700 | 1 | a Stunnenberg, Hendrik Gu Radboud University Nijmegen4 aut |
700 | 1 | a Stratton, Mikeu Wellcome Trust Sanger Institute4 aut |
700 | 1 | a Foekens, John Au Erasmus University Rotterdam4 aut |
700 | 1 | a Martens, John W Mu Erasmus University Rotterdam4 aut |
710 | 2 | a Erasmus University Rotterdamb Université Libre de Bruxelles (ULB)4 org |
773 | 0 | t Nature Communicationsd : Springer Science and Business Media LLCg 7q 7x 2041-1723 |
856 | 4 | u http://dx.doi.org/10.1038/ncomms12910x freey FULLTEXT |
856 | 4 | u https://doi.org/10.1038/ncomms12910 |
856 | 4 8 | u https://lup.lub.lu.se/record/941ca49e-9b75-4f4b-b2af-64aa170d33be |
856 | 4 8 | u https://doi.org/10.1038/ncomms12910 |
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