WFRF:(Wang Jian)
Sökning: WFRF:(Wang Jian) > (2015-2019) > Genome sequence of ...
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| Fältnamn | Indikatorer | Metadata |
|---|---|---|
| 000 | 04051naa a2200649 4500 | |
| 001 | oai:DiVA.org:umu-158120 | |
| 003 | SwePub | |
| 008 | 190412s2019 | |||||||||||000 ||eng| | |
| 024 | 7 | a https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-1581202 URI |
| 024 | 7 | a https://doi.org/10.1093/gigascience/giy1642 DOI |
| 040 | a (SwePub)umu | |
| 041 | a engb eng | |
| 042 | 9 SwePub | |
| 072 | 7 | a ref2 swepub-contenttype |
| 072 | 7 | a art2 swepub-publicationtype |
| 100 | 1 | a Xu, Chao-Qun4 aut |
| 245 | 1 0 | a Genome sequence of Malania oleifera, a tree with great value for nervonic acid production |
| 264 | c 2019-01-24 | |
| 264 | 1 | b Oxford University Press,c 2019 |
| 338 | a electronic2 rdacarrier | |
| 520 | a Background Malania oleifera, a member of the Olacaceae family, is an IUCN red listed tree, endemic and restricted to the Karst region of southwest China. This tree's seed is valued for its high content of precious fatty acids (especially nervonic acid). However, studies on its genetic makeup and fatty acid biogenesis are severely hampered by a lack of molecular and genetic tools. Findings We generated 51 Gb and 135Gb of raw DNA sequences, using Pacific Biosciences (PacBio) single-molecule real-time and 10x Genomics sequencing, respectively. A final genome assembly, with a scaffold N50 size of 4.65 Mb and a total length of 1.51Gb, was obtained by primary assembly based on PacBio long reads plus scaffolding with 10x Genomics reads. Identified repeats constituted approximate to 82% of the genome, and 24,064 protein-coding genes were predicted with high support. The genome has low heterozygosity and shows no evidence for recent whole genome duplication. Metabolic pathway genes relating to the accumulation of long-chain fatty acid were identified and studied in detail. Conclusions Here, we provide the first genome assembly and gene annotation for M. oleifera. The availability of these resources will be of great importance for conservation biology and for the functional genomics of nervonic acid biosynthesis. | |
| 650 | 7 | a NATURVETENSKAPx Biologix Genetik0 (SwePub)106092 hsv//swe |
| 650 | 7 | a NATURAL SCIENCESx Biological Sciencesx Genetics0 (SwePub)106092 hsv//eng |
| 653 | a de novo genome assembly | |
| 653 | a vulnerable plant | |
| 653 | a Malania | |
| 653 | a nervonic acid | |
| 653 | a transcriptomes | |
| 700 | 1 | a Liu, Hui4 aut |
| 700 | 1 | a Zhou, Shan-Shan4 aut |
| 700 | 1 | a Zhang, Dong-Xu4 aut |
| 700 | 1 | a Zhao, Wei4 aut |
| 700 | 1 | a Wang, Sihai4 aut |
| 700 | 1 | a Chen, Fu4 aut |
| 700 | 1 | a Sun, Yan-Qiang4 aut |
| 700 | 1 | a Nie, Shuai4 aut |
| 700 | 1 | a Jia, Kai-Hua4 aut |
| 700 | 1 | a Jiao, Si-Qian4 aut |
| 700 | 1 | a Zhang, Ren-Gang4 aut |
| 700 | 1 | a Yun, Quan-Zheng4 aut |
| 700 | 1 | a Guan, Wenbin4 aut |
| 700 | 1 | a Wang, Xuewen4 aut |
| 700 | 1 | a Gao, Qiong4 aut |
| 700 | 1 | a Bennetzen, Jeffrey L.4 aut |
| 700 | 1 | a Maghuly, Fatemeh4 aut |
| 700 | 1 | a Porth, Ilga4 aut |
| 700 | 1 | a Van de Peer, Yves4 aut |
| 700 | 1 | a Wang, Xiao-Ruu Umeå universitet,Institutionen för ekologi, miljö och geovetenskap,Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, School of Nature Conservation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China4 aut0 (Swepub:umu)xiwa0003 |
| 700 | 1 | a Ma, Yongpeng4 aut |
| 700 | 1 | a Mao, Jian-Feng4 aut |
| 710 | 2 | a Umeå universitetb Institutionen för ekologi, miljö och geovetenskap4 org |
| 773 | 0 | t GigaScienced : Oxford University Pressg 8:2q 8:2x 2047-217X |
| 856 | 4 | u https://doi.org/10.1093/gigascience/giy164y Fulltext |
| 856 | 4 | u https://umu.diva-portal.org/smash/get/diva2:1304461/FULLTEXT01.pdfx primaryx Raw objecty fulltext:print |
| 856 | 4 | u https://academic.oup.com/gigascience/article-pdf/8/2/giy164/28238723/giy164.pdf |
| 856 | 4 8 | u https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-158120 |
| 856 | 4 8 | u https://doi.org/10.1093/gigascience/giy164 |
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