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Search: (swepub) spr:eng pers:(Ågren Hans) > (2010-2014) > Modeling near-edge ...

  • Brena, BarbaraUppsala universitet,Materialteori (author)

Modeling near-edge fine structure x-ray spectra of the manganese catalytic site for water oxidation in photosystem II

  • Article/chapterEnglish2012

Publisher, publication year, extent ...

  • 2012-10-03
  • American Chemical Society (ACS),2012
  • electronicrdacarrier

Numbers

  • LIBRIS-ID:oai:DiVA.org:uu-186074
  • https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-186074URI
  • https://doi.org/10.1021/ja306794pDOI
  • https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-106135URI
  • https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-83007URI

Supplementary language notes

  • Language:English
  • Summary in:English

Part of subdatabase

Classification

  • Subject category:ref swepub-contenttype
  • Subject category:art swepub-publicationtype

Notes

  • QC 20121203
  • AuthorCount:3;
  • The Mn 1s near-edge absorption fine structure (NEXAFS) has been computed by means of transition-state gradient-corrected density functional theory (DFT) on four Mn 4Ca clusters modeling the successive S 0 to S 3 steps of the oxygen-evolving complex (OEC) in photosystem II (PSII). The model clusters were obtained from a previous theoretical study where they were determined by energy minimization. They are composed of Mn(III) and Mn(IV) atoms, progressing from Mn(III) 3Mn(IV) for S 0 to Mn(III) 2Mn(IV) 2 for S 1 to Mn(III)Mn(IV) 3 for S 2 to Mn(IV) 4 for S 3, implying an Mn-centered oxidation during each step of the photosynthetic oxygen evolution. The DFT simulations of the Mn 1s absorption edge reproduce the experimentally measured curves quite well. By the half-height method, the theoretical IPEs are shifted by 0.93 eV for the S 0 → S 1 transition, by 1.43 eV for the S 1 → S 2 transition, and by 0.63 eV for the S 2 → S 3 transition. The inflection point energy (IPE) shifts depend strongly on the method used to determine them, and the most interesting result is that the present clusters reproduce the shift in the S 2 → S 3 transition obtained by both the half-height and second-derivative methods, thus giving strong support to the previously suggested structures and assignments.

Subject headings and genre

  • NATURVETENSKAP Kemi hsv//swe
  • NATURAL SCIENCES Chemical Sciences hsv//eng
  • Absorption edges
  • Absorption fine structure
  • Catalytic sites
  • Clusters modeling
  • Energy minimization
  • Fine structures
  • Gradient-corrected density functional theory
  • Inflection points
  • Oxygen evolution
  • Oxygen-evolving complexes
  • Photosystem II
  • Theoretical study
  • Transition-state
  • Water oxidation
  • X-ray spectra
  • Catalytic oxidation
  • Density functional theory
  • Manganese
  • oxygen
  • water
  • article
  • catalysis
  • chemical structure
  • energy
  • molecular model
  • oxidation
  • photosynthesis
  • roentgen spectroscopy

Added entries (persons, corporate bodies, meetings, titles ...)

  • Siegbahn, Per E. M.Stockholms universitet,Fysikum(Swepub:su)ps (author)
  • Ågren, HansKTH,Teoretisk kemi och biologi(Swepub:kth)u1l2s96v (author)
  • Uppsala universitetMaterialteori (creator_code:org_t)

Related titles

  • In:Journal of the American Chemical Society: American Chemical Society (ACS)134:41, s. 17157-171670002-78631520-5126

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