A reference panel of 64,976 haplotypes for genotype imputation

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McCarthy, ShaneWellcome Trust Sanger Institute (author)

A reference panel of 64,976 haplotypes for genotype imputation

Article/chapterEnglish2016

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2016-08-22
Springer Science and Business Media LLC,2016
5 s.

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LIBRIS-ID:oai:lup.lub.lu.se:d9051ca5-69ec-4527-870a-53c06a0c2cc2
https://lup.lub.lu.se/record/d9051ca5-69ec-4527-870a-53c06a0c2cc2URI
https://doi.org/10.1038/ng.3643DOI

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Language:English
Summary in:English

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Subject category:art swepub-publicationtype
Subject category:ref swepub-contenttype

Notes

We describe a reference panel of 64,976 human haplotypes at 39,235,157 SNPs constructed using whole-genome sequence data from 20 studies of predominantly European ancestry. Using this resource leads to accurate genotype imputation at minor allele frequencies as low as 0.1% and a large increase in the number of SNPs tested in association studies, and it can help to discover and refine causal loci. We describe remote server resources that allow researchers to carry out imputation and phasing consistently and efficiently.

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Das, SayantanUniversity of Michigan (author)
Kretzschmar, Warren (author)
Delaneau, Olivier (author)
Wood, Andrew R.University of Exeter (author)
Teumer, Alexander (author)
Kang, Hyun MinUniversity of Michigan (author)
Fuchsberger, ChristianUniversity of Michigan (author)
Danecek, PetrWellcome Trust Sanger Institute (author)
Sharp, KevinUniversity of Oxford (author)
Luo, YangWellcome Trust Sanger Institute (author)
Sidore, Carlo (author)
Kwong, AlanUniversity of Michigan (author)
Timpson, Nicholas (author)
Koskinen, Seppo (author)
Vrieze, Scott (author)
Scott, Laura J.University of Michigan (author)
Zhang, He (author)
Mahajan, Anubha (author)
Veldink, Jan (author)
Peters, Ulrike (author)
Pato, Carlos (author)
Van Duijn, Cornelia M.Erasmus University Medical Center (author)
Gillies, Christopher E. (author)
Gandin, Ilaria (author)
Mezzavilla, Massimo (author)
Gilly, ArthurWellcome Trust Sanger Institute (author)
Cocca, Massimiliano (author)
Traglia, Michela (author)
Angius, Andrea (author)
Barrett, Jeffrey C.Wellcome Trust Sanger Institute (author)
Boomsma, Dorrett (author)
Branham, KariUniversity of Michigan (author)
Breen, Gerome (author)
Brummett, Chad M.University of Michigan (author)
Busonero, Fabio (author)
Campbell, HarryUniversity of Edinburgh (author)
Chan, Andrew (author)
Chen, SaiUniversity of Michigan (author)
Chew, Emily (author)
Collins, Francis S.National Human Genome Research Institute (author)
Corbin, Laura J. (author)
Smith, George Davey (author)
Dedoussis, GeorgeHarokopio University (author)
Dorr, Marcus (author)
Farmaki, Aliki EleniHarokopio University (author)
Ferrucci, Luigi (author)
Forer, Lukas (author)
Fraser, Ross M.University of Michigan (author)
Gabriel, Stacey (author)
Levy, Shawn (author)
Groop, LeifLund University,Lunds universitet,Translationell muskelforskning,Forskargrupper vid Lunds universitet,Translational Muscle Research,Lund University Research Groups(Swepub:lu)endo-lgr (author)
Harrison, Tabitha (author)
Hattersley, AndrewUniversity of Exeter (author)
Holmen, Oddgeir L. (author)
Hveem, Kristian (author)
Kretzler, Matthias (author)
Lee, James C.University of Cambridge (author)
McGue, MattUniversity of Minnesota (author)
Meitinger, Thomas (author)
Melzer, DavidUniversity of Exeter (author)
Min, Josine L.University of Bristol (author)
Mohlke, Karen L. (author)
Vincent, John B.University of Toronto (author)
Nauck, Matthias (author)
Nickerson, Deborah (author)
Palotie, AarnoLund University,Lunds universitet,Translationell muskelforskning,Forskargrupper vid Lunds universitet,Translational Muscle Research,Lund University Research Groups(Swepub:lu)med-aop (author)
Pato, Michele (author)
Pirastu, Nicola (author)
McInnis, MelvinUniversity of Michigan (author)
Richards, J. BrentKing's College London (author)
Sala, Cinzia (author)
Salomaa, Veikko (author)
Schlessinger, David (author)
Schoenherr, Sebastian (author)
Slagboom, P. ElineLeiden University Medical Centre (author)
Small, KerrinKing's College London (author)
Spector, TimothyKing's College London (author)
Stambolian, DwightUniversity of Pennsylvania (author)
Tuke, MarcusUniversity of Exeter (author)
Tuomilehto, JaakkoKing Abdulaziz University (author)
Van Den Berg, Leonard H. (author)
Van Rheenen, Wouter (author)
Volker, Uwe (author)
Wijmenga, CiscaUniversity of Groningen (author)
Toniolo, Daniela (author)
Zeggini, EleftheriaWellcome Trust Sanger Institute (author)
Gasparini, Paolo (author)
Sampson, Matthew G. (author)
Wilson, James F.University of Edinburgh (author)
Frayling, TimothyUniversity of Exeter (author)
De Bakker, Paul I W (author)
Swertz, Morris A.University of Groningen (author)
McCarroll, StevenMassachusetts General Hospital (author)
Kooperberg, Charles (author)
Dekker, Annelot (author)
Altshuler, David (author)
Willer, CristenUniversity of Michigan (author)
Iacono, William (author)
Ripatti, Samuli (author)
Soranzo, NicoleUniversity of Cambridge (author)
Walter, KlaudiaWellcome Trust Sanger Institute (author)
Swaroop, Anand (author)
Cucca, Francesco (author)
Anderson, Carl A.Wellcome Trust Sanger Institute (author)
Myers, Richard M. (author)
Boehnke, MichaelUniversity of Michigan (author)
McCarthy, Mark I. (author)
Durbin, RichardWellcome Trust Sanger Institute (author)
Abecasis, GonçaloUniversity of Michigan (author)
Marchini, JonathanUniversity of Oxford (author)
Wellcome Trust Sanger InstituteUniversity of Michigan (creator_code:org_t)

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In:Nature Genetics: Springer Science and Business Media LLC48:10, s. 1279-12831061-40361546-1718

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By the author/editor: McCarthy, Shane; Das, Sayantan; Kretzschmar, War ...; Delaneau, Olivie ...; Wood, Andrew R.; Teumer, Alexande ...; show more...; Kang, Hyun Min; Fuchsberger, Chr ...; Danecek, Petr; Sharp, Kevin; Luo, Yang; Sidore, Carlo; Kwong, Alan; Timpson, Nichola ...; Koskinen, Seppo; Vrieze, Scott; Scott, Laura J.; Zhang, He; Mahajan, Anubha; Veldink, Jan; Peters, Ulrike; Pato, Carlos; Van Duijn, Corne ...; Gillies, Christo ...; Gandin, Ilaria; Mezzavilla, Mass ...; Gilly, Arthur; Cocca, Massimili ...; Traglia, Michela; Angius, Andrea; Barrett, Jeffrey ...; Boomsma, Dorrett; Branham, Kari; Breen, Gerome; Brummett, Chad M ...; Busonero, Fabio; Campbell, Harry; Chan, Andrew; Chen, Sai; Chew, Emily; Collins, Francis ...; Corbin, Laura J.; Smith, George Da ...; Dedoussis, Georg ...; Dorr, Marcus; Farmaki, Aliki E ...; Ferrucci, Luigi; Forer, Lukas; Fraser, Ross M.; Gabriel, Stacey; Levy, Shawn; Groop, Leif; Harrison, Tabith ...; Hattersley, Andr ...; Holmen, Oddgeir ...; Hveem, Kristian; Kretzler, Matthi ...; Lee, James C.; McGue, Matt; Meitinger, Thoma ...; Melzer, David; Min, Josine L.; Mohlke, Karen L.; Vincent, John B.; Nauck, Matthias; Nickerson, Debor ...; Palotie, Aarno; Pato, Michele; Pirastu, Nicola; McInnis, Melvin; Richards, J. Bre ...; Sala, Cinzia; Salomaa, Veikko; Schlessinger, Da ...; Schoenherr, Seba ...; Slagboom, P. Eli ...; Small, Kerrin; Spector, Timothy; Stambolian, Dwig ...; Tuke, Marcus; Tuomilehto, Jaak ...; Van Den Berg, Le ...; Van Rheenen, Wou ...; Volker, Uwe; Wijmenga, Cisca; Toniolo, Daniela; Zeggini, Elefthe ...; Gasparini, Paolo; Sampson, Matthew ...; Wilson, James F.; Frayling, Timoth ...; De Bakker, Paul ...; Swertz, Morris A ...; McCarroll, Steve ...; Kooperberg, Char ...; Dekker, Annelot; Altshuler, David; Willer, Cristen; Iacono, William; Ripatti, Samuli; Soranzo, Nicole; Walter, Klaudia; Swaroop, Anand; Cucca, Francesco; Anderson, Carl A ...; Myers, Richard M ...; Boehnke, Michael; McCarthy, Mark I ...; Durbin, Richard; Abecasis, Gonçal ...; Marchini, Jonath ...; show less...

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MEDICAL AND HEALTH SCIENCES: MEDICAL AND HEAL ...; and Basic Medicine; and Medical Genetics

Articles in the publication: Nature Genetics

By the university: Lund University

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