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Imputation and subs...
Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33
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Wang, Zhaoming (author)
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Zhu, Bin (author)
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Zhang, Mingfeng (author)
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show more...
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Parikh, Hemang (author)
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Jia, Jinping (author)
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Chung, Charles C (author)
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Sampson, Joshua N (author)
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Hoskins, Jason W (author)
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Hutchinson, Amy (author)
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Burdette, Laurie (author)
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Ibrahim, Abdisamad (author)
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Hautman, Christopher (author)
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Raj, Preethi S (author)
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Abnet, Christian C (author)
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- Adjei, Andrew A (author)
- Karolinska Institutet
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- Ahlbom, Anders (author)
- Karolinska Institutet
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Albanes, Demetrius (author)
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Allen, Naomi E (author)
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Ambrosone, Christine B (author)
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Aldrich, Melinda (author)
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Amiano, Pilar (author)
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Amos, Christopher (author)
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- Andersson, Ulrika (author)
- Umeå universitet,Onkologi
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Andriole, Gerald (author)
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Andrulis, Irene L (author)
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Arici, Cecilia (author)
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Arslan, Alan A (author)
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Austin, Melissa A (author)
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Baris, Dalsu (author)
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Barkauskas, Donald A (author)
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Bassig, Bryan A (author)
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Beane Freeman, Laura E (author)
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Berg, Christine D (author)
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Berndt, Sonja I (author)
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Bertazzi, Pier Alberto (author)
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Biritwum, Richard B (author)
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Black, Amanda (author)
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Blot, William (author)
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Boeing, Heiner (author)
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Boffetta, Paolo (author)
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Bolton, Kelly (author)
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Boutron-Ruault, Marie-Christine (author)
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Bracci, Paige M (author)
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Brennan, Paul (author)
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Brinton, Louise A (author)
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Brotzman, Michelle (author)
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Bueno-de-Mesquita, H Bas (author)
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Buring, Julie E (author)
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Butler, Mary Ann (author)
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Cai, Qiuyin (author)
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Cancel-Tassin, Geraldine (author)
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Canzian, Federico (author)
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Cao, Guangwen (author)
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Caporaso, Neil E (author)
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Carrato, Alfredo (author)
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Carreon, Tania (author)
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Carta, Angela (author)
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Chang, Gee-Chen (author)
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Chang, I-Shou (author)
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Chang-Claude, Jenny (author)
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Che, Xu (author)
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Chen, Chien-Jen (author)
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Chen, Chih-Yi (author)
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Chen, Chung-Hsing (author)
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Chen, Constance (author)
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Chen, Kuan-Yu (author)
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Chen, Yuh-Min (author)
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Chokkalingam, Anand P (author)
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Chu, Lisa W (author)
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Clavel-Chapelon, Francoise (author)
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Colditz, Graham A (author)
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Colt, Joanne S (author)
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Conti, David (author)
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Cook, Michael B (author)
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Cortessis, Victoria K (author)
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Crawford, E David (author)
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Cussenot, Olivier (author)
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Davis, Faith G (author)
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De Vivo, Immaculata (author)
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Deng, Xiang (author)
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Ding, Ti (author)
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Dinney, Colin P (author)
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Di Stefano, Anna Luisa (author)
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Diver, W Ryan (author)
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Duell, Eric J (author)
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- Elena, Joanne W (author)
- Karolinska Institutet
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Fan, Jin-Hu (author)
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Feigelson, Heather Spencer (author)
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- Feychting, Maria (author)
- Karolinska Institutet
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Figueroa, Jonine D (author)
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Flanagan, Adrienne M (author)
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Fraumeni, Joseph F (author)
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Freedman, Neal D (author)
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Fridley, Brooke L (author)
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Fuchs, Charles S (author)
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Gago-Dominguez, Manuela (author)
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Gallinger, Steven (author)
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Gao, Yu-Tang (author)
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Gapstur, Susan M (author)
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Garcia-Closas, Montserrat (author)
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Garcia-Closas, Reina (author)
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Gastier-Foster, Julie M (author)
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Gaziano, J Michael (author)
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Gerhard, Daniela S (author)
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Giffen, Carol A (author)
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Giles, Graham G (author)
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Gillanders, Elizabeth M (author)
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Giovannucci, Edward L (author)
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Goggins, Michael (author)
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Gokgoz, Nalan (author)
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Goldstein, Alisa M (author)
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Gonzalez, Carlos (author)
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Gorlick, Richard (author)
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Greene, Mark H (author)
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Gross, Myron (author)
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Grossman, H Barton (author)
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Grubb, Robert (author)
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Gu, Jian (author)
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Guan, Peng (author)
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Haiman, Christopher A (author)
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- Hallmans, Göran (author)
- Umeå universitet,Enheten för biobanksforskning,Näringsforskning
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Hankinson, Susan E (author)
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Harris, Curtis C (author)
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Hartge, Patricia (author)
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Hattinger, Claudia (author)
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Hayes, Richard B (author)
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He, Qincheng (author)
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Helman, Lee (author)
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Henderson, Brian E (author)
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- Henriksson, Roger (author)
- Umeå universitet,Onkologi
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Hoffman-Bolton, Judith (author)
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Hohensee, Chancellor (author)
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Holly, Elizabeth A (author)
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Hong, Yun-Chul (author)
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Hoover, Robert N (author)
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Hosgood, H Dean (author)
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Hsiao, Chin-Fu (author)
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Hsing, Ann W (author)
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Hsiung, Chao Agnes (author)
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Hu, Nan (author)
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Hu, Wei (author)
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Hu, Zhibin (author)
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Huang, Ming-Shyan (author)
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Hunter, David J (author)
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Inskip, Peter D (author)
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Ito, Hidemi (author)
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Jacobs, Eric J (author)
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Jacobs, Kevin B (author)
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Jenab, Mazda (author)
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Ji, Bu-Tian (author)
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Johansen, Christoffer (author)
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- Johansson, Mattias (author)
- Umeå universitet,Institutionen för folkhälsa och klinisk medicin,International Agency for Research on Cancer (IARC-WHO), Lyon, France
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Johnson, Alison (author)
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Kaaks, Rudolf (author)
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Kamat, Ashish M (author)
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Kamineni, Aruna (author)
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Karagas, Margaret (author)
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Khanna, Chand (author)
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Khaw, Kay-Tee (author)
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Kim, Christopher (author)
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Kim, In-Sam (author)
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Kim, Jin Hee (author)
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Kim, Yeul Hong (author)
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Kim, Young-Chul (author)
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Kim, Young Tae (author)
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Kang, Chang Hyun (author)
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Jung, Yoo Jin (author)
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Kitahara, Cari M (author)
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Klein, Alison P (author)
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Klein, Robert (author)
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Kogevinas, Manolis (author)
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Koh, Woon-Puay (author)
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Kohno, Takashi (author)
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Kolonel, Laurence N (author)
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Kooperberg, Charles (author)
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Kratz, Christian P (author)
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Krogh, Vittorio (author)
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Kunitoh, Hideo (author)
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Kurtz, Robert C (author)
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Kurucu, Nilgun (author)
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Lan, Qing (author)
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Lathrop, Mark (author)
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Lau, Ching C (author)
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Lecanda, Fernando (author)
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Lee, Kyoung-Mu (author)
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Lee, Maxwell P (author)
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Le Marchand, Loic (author)
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Lerner, Seth P (author)
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Li, Donghui (author)
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Liao, Linda M (author)
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Lim, Wei-Yen (author)
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Lin, Dongxin (author)
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Lin, Jie (author)
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Lindstrom, Sara (author)
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Linet, Martha S (author)
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Lissowska, Jolanta (author)
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Liu, Jianjun (author)
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- Ljungberg, Börje (author)
- Umeå universitet,Urologi och andrologi,Njurcancer
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Lloreta, Josep (author)
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Lu, Daru (author)
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Ma, Jing (author)
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Malats, Nuria (author)
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Mannisto, Satu (author)
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Marina, Neyssa (author)
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Mastrangelo, Giuseppe (author)
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Matsuo, Keitaro (author)
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McGlynn, Katherine A (author)
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McKean-Cowdin, Roberta (author)
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McNeill, Lorna H (author)
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McWilliams, Robert R (author)
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- Melin, Beatrice S (author)
- Umeå universitet,Onkologi,Kirurgi
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Meltzer, Paul S (author)
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Mensah, James E (author)
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Miao, Xiaoping (author)
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Michaud, Dominique S (author)
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Mondul, Alison M (author)
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Moore, Lee E (author)
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Muir, Kenneth (author)
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Niwa, Shelley (author)
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Olson, Sara H (author)
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Orr, Nick (author)
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Panico, Salvatore (author)
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Park, Jae Yong (author)
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Patel, Alpa V (author)
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Patino-Garcia, Ana (author)
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Pavanello, Sofia (author)
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Peeters, Petra H M (author)
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Peplonska, Beata (author)
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Peters, Ulrike (author)
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Petersen, Gloria M (author)
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Picci, Piero (author)
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Pike, Malcolm C (author)
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Porru, Stefano (author)
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Prescott, Jennifer (author)
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Pu, Xia (author)
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Purdue, Mark P (author)
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Qiao, You-Lin (author)
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Rajaraman, Preetha (author)
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Riboli, Elio (author)
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Risch, Harvey A (author)
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Rodabough, Rebecca J (author)
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Rothman, Nathaniel (author)
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Ruder, Avima M (author)
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Ryu, Jeong-Seon (author)
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Sanson, Marc (author)
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Schned, Alan (author)
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Schumacher, Fredrick R (author)
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Schwartz, Ann G (author)
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Schwartz, Kendra L (author)
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Schwenn, Molly (author)
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Scotlandi, Katia (author)
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Seow, Adeline (author)
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Serra, Consol (author)
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Serra, Massimo (author)
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Sesso, Howard D (author)
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Severi, Gianluca (author)
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Shen, Hongbing (author)
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Shen, Min (author)
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Shete, Sanjay (author)
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Shiraishi, Kouya (author)
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Shu, Xiao-Ou (author)
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Siddiq, Afshan (author)
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Sierrasesumaga, Luis (author)
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Sierri, Sabina (author)
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Loon Sihoe, Alan Dart (author)
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Silverman, Debra T (author)
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Simon, Matthias (author)
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Southey, Melissa C (author)
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Spector, Logan (author)
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Spitz, Margaret (author)
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Stampfer, Meir (author)
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- Stattin, Pär (author)
- Umeå universitet,Uppsala universitet,Urologkirurgi,Urologi och andrologi
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Stern, Mariana C (author)
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Stevens, Victoria L (author)
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Stolzenberg-Solomon, Rachael Z (author)
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Stram, Daniel O (author)
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Strom, Sara S (author)
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Su, Wu-Chou (author)
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Sund, Malin (author)
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Sung, Sook Whan (author)
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Swerdlow, Anthony (author)
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Tan, Wen (author)
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Tanaka, Hideo (author)
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Tang, Wei (author)
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Tang, Ze-Zhang (author)
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Tardon, Adonina (author)
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Tay, Evelyn (author)
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Taylor, Philip R (author)
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Tettey, Yao (author)
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Thomas, David M (author)
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Tirabosco, Roberto (author)
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Tjonneland, Anne (author)
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Tobias, Geoffrey S (author)
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Toro, Jorge R (author)
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Travis, Ruth C (author)
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Trichopoulos, Dimitrios (author)
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Troisi, Rebecca (author)
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Truelove, Ann (author)
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Tsai, Ying-Huang (author)
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Tucker, Margaret A (author)
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Tumino, Rosario (author)
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Van Den Berg, David (author)
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Van Den Eeden, Stephen K (author)
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Vermeulen, Roel (author)
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Vineis, Paolo (author)
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Visvanathan, Kala (author)
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Vogel, Ulla (author)
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Wang, Chaoyu (author)
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Wang, Chengfeng (author)
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Wang, Junwen (author)
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Wang, Sophia S (author)
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Weiderpass, Elisabete (author)
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Weinstein, Stephanie J (author)
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Wentzensen, Nicolas (author)
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Wheeler, William (author)
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White, Emily (author)
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Wiencke, John K (author)
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Wolk, Alicja (author)
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Wolpin, Brian M (author)
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Wong, Maria Pik (author)
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Wrensch, Margaret (author)
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Wu, Chen (author)
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Wu, Tangchun (author)
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Wu, Xifeng (author)
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Wu, Yi-Long (author)
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Wunder, Jay S (author)
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Xiang, Yong-Bing (author)
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Xu, Jun (author)
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Yang, Hannah P (author)
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Yang, Pan-Chyr (author)
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Yatabe, Yasushi (author)
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Ye, Yuanqing (author)
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Yeboah, Edward D (author)
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Yin, Zhihua (author)
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Ying, Chen (author)
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Yu, Chong-Jen (author)
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Yu, Kai (author)
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Yuan, Jian-Min (author)
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Zanetti, Krista A (author)
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Zeleniuch-Jacquotte, Anne (author)
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Zheng, Wei (author)
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Zhou, Baosen (author)
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Mirabello, Lisa (author)
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Savage, Sharon A (author)
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Kraft, Peter (author)
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Chanock, Stephen J (author)
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Yeager, Meredith (author)
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Landi, Maria Terese (author)
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Shi, Jianxin (author)
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Chatterjee, Nilanjan (author)
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Amundadottir, Laufey T (author)
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(creator_code:org_t)
- 2014-07-15
- 2014
- English.
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In: Human Molecular Genetics. - : Oxford University Press (OUP). - 0964-6906 .- 1460-2083. ; 23:24, s. 6616-6633
- Related links:
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https://academic.oup...
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
Subject headings
Close
- Genome-wide association studies (GWAS) have mapped risk alleles for at least 10 distinct cancers to a small region of 63 000 bp on chromosome 5p15.33. This region harbors the TERT and CLPTM1L genes; the former encodes the catalytic subunit of telomerase reverse transcriptase and the latter may play a role in apoptosis. To investigate further the genetic architecture of common susceptibility alleles in this region, we conducted an agnostic subset-based meta-analysis (association analysis based on subsets) across six distinct cancers in 34 248 cases and 45 036 controls. Based on sequential conditional analysis, we identified as many as six independent risk loci marked by common single-nucleotide polymorphisms: five in the TERT gene (Region 1: rs7726159, P = 2.10 × 10(-39); Region 3: rs2853677, P = 3.30 × 10(-36) and PConditional = 2.36 × 10(-8); Region 4: rs2736098, P = 3.87 × 10(-12) and PConditional = 5.19 × 10(-6), Region 5: rs13172201, P = 0.041 and PConditional = 2.04 × 10(-6); and Region 6: rs10069690, P = 7.49 × 10(-15) and PConditional = 5.35 × 10(-7)) and one in the neighboring CLPTM1L gene (Region 2: rs451360; P = 1.90 × 10(-18) and PConditional = 7.06 × 10(-16)). Between three and five cancers mapped to each independent locus with both risk-enhancing and protective effects. Allele-specific effects on DNA methylation were seen for a subset of risk loci, indicating that methylation and subsequent effects on gene expression may contribute to the biology of risk variants on 5p15.33. Our results provide strong support for extensive pleiotropy across this region of 5p15.33, to an extent not previously observed in other cancer susceptibility loci.
Subject headings
- MEDICIN OCH HÄLSOVETENSKAP -- Klinisk medicin -- Cancer och onkologi (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Clinical Medicine -- Cancer and Oncology (hsv//eng)
Publication and Content Type
- ref (subject category)
- art (subject category)
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Wang, Zhaoming
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Zhu, Bin
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Zhang, Mingfeng
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Parikh, Hemang
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Jia, Jinping
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Chung, Charles C
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show more...
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Sampson, Joshua ...
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Hoskins, Jason W
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Hutchinson, Amy
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Burdette, Laurie
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Ibrahim, Abdisam ...
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Hautman, Christo ...
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Raj, Preethi S
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Abnet, Christian ...
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Adjei, Andrew A
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Ahlbom, Anders
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Albanes, Demetri ...
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Allen, Naomi E
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Ambrosone, Chris ...
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Aldrich, Melinda
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Amiano, Pilar
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Amos, Christophe ...
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Andersson, Ulrik ...
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Andriole, Gerald
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Andrulis, Irene ...
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Arici, Cecilia
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Arslan, Alan A
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Austin, Melissa ...
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Baris, Dalsu
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Barkauskas, Dona ...
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Bassig, Bryan A
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Beane Freeman, L ...
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Berg, Christine ...
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Berndt, Sonja I
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Bertazzi, Pier A ...
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Biritwum, Richar ...
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Black, Amanda
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Blot, William
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Boeing, Heiner
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Boffetta, Paolo
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Bolton, Kelly
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Boutron-Ruault, ...
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Bracci, Paige M
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Brennan, Paul
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Brinton, Louise ...
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Brotzman, Michel ...
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Bueno-de-Mesquit ...
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Buring, Julie E
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Butler, Mary Ann
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Cai, Qiuyin
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Cancel-Tassin, G ...
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Canzian, Federic ...
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Cao, Guangwen
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Caporaso, Neil E
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Carrato, Alfredo
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Carreon, Tania
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Carta, Angela
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Chang, Gee-Chen
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Chang, I-Shou
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Chang-Claude, Je ...
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Che, Xu
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Chen, Chien-Jen
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Chen, Chih-Yi
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Chen, Chung-Hsin ...
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Chen, Constance
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Chen, Kuan-Yu
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Chen, Yuh-Min
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Chokkalingam, An ...
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Chu, Lisa W
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Clavel-Chapelon, ...
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Colditz, Graham ...
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Colt, Joanne S
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Conti, David
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Cook, Michael B
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Cortessis, Victo ...
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Crawford, E Davi ...
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Cussenot, Olivie ...
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Davis, Faith G
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De Vivo, Immacul ...
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Deng, Xiang
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Ding, Ti
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Dinney, Colin P
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Di Stefano, Anna ...
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Diver, W Ryan
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Duell, Eric J
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Elena, Joanne W
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Fan, Jin-Hu
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Feigelson, Heath ...
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Feychting, Maria
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Figueroa, Jonine ...
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Flanagan, Adrien ...
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Fraumeni, Joseph ...
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Freedman, Neal D
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Fridley, Brooke ...
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Fuchs, Charles S
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Gago-Dominguez, ...
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Gallinger, Steve ...
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Gao, Yu-Tang
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Gapstur, Susan M
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Garcia-Closas, M ...
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Garcia-Closas, R ...
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Gastier-Foster, ...
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Gaziano, J Micha ...
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Gerhard, Daniela ...
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Giffen, Carol A
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Giles, Graham G
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Gillanders, Eliz ...
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Giovannucci, Edw ...
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Goggins, Michael
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Gokgoz, Nalan
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Goldstein, Alisa ...
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Gonzalez, Carlos
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Gorlick, Richard
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Greene, Mark H
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Gross, Myron
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Grossman, H Bart ...
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Grubb, Robert
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Gu, Jian
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Guan, Peng
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Haiman, Christop ...
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Hallmans, Göran
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Hankinson, Susan ...
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Harris, Curtis C
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Hartge, Patricia
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Hattinger, Claud ...
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Hayes, Richard B
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He, Qincheng
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Helman, Lee
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Henderson, Brian ...
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Henriksson, Roge ...
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Hoffman-Bolton, ...
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Hohensee, Chance ...
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Holly, Elizabeth ...
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Hong, Yun-Chul
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Hoover, Robert N
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Hosgood, H Dean
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Hsiao, Chin-Fu
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Hsing, Ann W
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Hsiung, Chao Agn ...
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Hu, Nan
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Hu, Wei
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Hu, Zhibin
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Huang, Ming-Shya ...
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Hunter, David J
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Inskip, Peter D
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Ito, Hidemi
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Jacobs, Eric J
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Jacobs, Kevin B
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Jenab, Mazda
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Ji, Bu-Tian
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Johansen, Christ ...
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Johansson, Matti ...
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Johnson, Alison
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Kaaks, Rudolf
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Kamat, Ashish M
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Kamineni, Aruna
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Karagas, Margare ...
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Khanna, Chand
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Khaw, Kay-Tee
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Kim, Christopher
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Kim, In-Sam
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Kim, Jin Hee
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Kim, Yeul Hong
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Kim, Young-Chul
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Kim, Young Tae
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Kang, Chang Hyun
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Jung, Yoo Jin
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Kitahara, Cari M
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Klein, Alison P
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Klein, Robert
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Kogevinas, Manol ...
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Koh, Woon-Puay
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Kohno, Takashi
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Kolonel, Laurenc ...
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Kooperberg, Char ...
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Kratz, Christian ...
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Krogh, Vittorio
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Kunitoh, Hideo
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Kurtz, Robert C
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Kurucu, Nilgun
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Lan, Qing
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Lathrop, Mark
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Lau, Ching C
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Lecanda, Fernand ...
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Lee, Kyoung-Mu
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Lee, Maxwell P
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Le Marchand, Loi ...
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Lerner, Seth P
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Li, Donghui
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Liao, Linda M
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Lim, Wei-Yen
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Lin, Dongxin
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Lin, Jie
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Lindstrom, Sara
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Linet, Martha S
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Lissowska, Jolan ...
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Liu, Jianjun
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Ljungberg, Börje
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Lloreta, Josep
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Lu, Daru
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Ma, Jing
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Malats, Nuria
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Mannisto, Satu
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Marina, Neyssa
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Mastrangelo, Giu ...
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Matsuo, Keitaro
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McGlynn, Katheri ...
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McKean-Cowdin, R ...
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McNeill, Lorna H
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McWilliams, Robe ...
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Melin, Beatrice ...
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Meltzer, Paul S
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Mensah, James E
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Miao, Xiaoping
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Michaud, Dominiq ...
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Mondul, Alison M
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Moore, Lee E
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Muir, Kenneth
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Olson, Sara H
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Park, Jae Yong
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Picci, Piero
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Pike, Malcolm C
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Pu, Xia
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Purdue, Mark P
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Ruder, Avima M
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Serra, Consol
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Serra, Massimo
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Sesso, Howard D
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Severi, Gianluca
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Shen, Min
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Shete, Sanjay
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Shiraishi, Kouya
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Shu, Xiao-Ou
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Sierri, Sabina
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Silverman, Debra ...
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Simon, Matthias
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Southey, Melissa ...
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Spector, Logan
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Spitz, Margaret
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Stampfer, Meir
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Stattin, Pär
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Stern, Mariana C
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Stevens, Victori ...
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Stolzenberg-Solo ...
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Stram, Daniel O
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Su, Wu-Chou
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Tan, Wen
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Tanaka, Hideo
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Tang, Wei
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Tang, Ze-Zhang
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Tardon, Adonina
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Tay, Evelyn
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Taylor, Philip R
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Tettey, Yao
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Wang, Junwen
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Wheeler, William
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White, Emily
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Wiencke, John K
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Wolk, Alicja
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Wu, Tangchun
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Wu, Yi-Long
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Xiang, Yong-Bing
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Xu, Jun
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Yang, Hannah P
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Yang, Pan-Chyr
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Yatabe, Yasushi
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Ye, Yuanqing
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Yeboah, Edward D
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Yin, Zhihua
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- About the subject
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- MEDICAL AND HEALTH SCIENCES
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MEDICAL AND HEAL ...
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and Clinical Medicin ...
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and Cancer and Oncol ...
- Articles in the publication
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Human Molecular ...
- By the university
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Uppsala University
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Umeå University
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Karolinska Institutet