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Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes

Gilbert, M. Thomas P. (author)
Drautz, Daniela I. (author)
Lesk, Arthur M. (author)
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Ho, Simon Y. W. (author)
Qi, Ji (author)
Ratan, Aakrosh (author)
Hsu, Chih-Hao (author)
Sher, Andrei (author)
Dalén, Love (author)
Naturhistoriska riksmuseet,Enheten för bioinformatik och genetik
Götherström, Anders (author)
Uppsala universitet,Evolutionsbiologi
Tomsho, Lynn P. (author)
Rendulic, Snjezana (author)
Packard, Michael (author)
Campos, Paula F. (author)
Kuznetsova, Tatyana V. (author)
Shidlovskiy, Fyodor (author)
Tikhonov, Alexei (author)
Willerslev, Eske (author)
Iacumin, Paola (author)
Buigues, Bernard (author)
Ericson, Per G P, 1956- (author)
Naturhistoriska riksmuseet,Forskningsavdelningen centralt
Germonpre, Mietje (author)
Kosintsev, Pavel (author)
Nikolaev, Vladimir (author)
Nowak-Kemp, Malgosia (author)
Knight, James R. (author)
Irzyk, Gerard P. (author)
Perbost, Clotilde S. (author)
Fredrikson, Karin M. (author)
Harkins, Timothy T. (author)
Sheridan, Sharon (author)
Miller, Webb (author)
Schuster, Stephan C. (author)
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 (creator_code:org_t)
2008-06-17
2008
English.
In: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 105:24, s. 8327-8332
Related links:
http://www.pnas.org/...
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https://www.pnas.org...
https://urn.kb.se/re...
https://doi.org/10.1...
https://urn.kb.se/re...
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  • Journal article (peer-reviewed)
Abstract Subject headings
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  • We report five new complete mitochondrial DNA (mtDNA) genomes of Siberian woolly mammoth (Mammuthus primigenius), sequenced with up to 73-fold coverage from DNA extracted from hair shaft material. Three of the sequences present the first complete mtDNA genomes of mammoth clade II. Analysis of these and 13 recently published mtDNA genomes demonstrates the existence of two apparently sympatric mtDNA clades that exhibit high interclade divergence. The analytical power afforded by the analysis of the complete mtDNA genomes reveals a surprisingly ancient coalescence age of the two clades, approximate to 1-2 million years, depending on the calibration technique. Furthermore, statistical analysis of the temporal distribution of the C-14 ages of these and previously identified members of the two mammoth clades suggests that clade II went extinct before clade I. Modeling of protein structures failed to indicate any important functional difference between genomes belonging to the two clades, suggesting that the loss of clade II more likely is due to genetic drift than a selective sweep.

Subject headings

NATURVETENSKAP  -- Biologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences (hsv//eng)
NATURVETENSKAP  -- Biologi -- Biologisk systematik (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Biological Systematics (hsv//eng)
NATURVETENSKAP  -- Biologi -- Evolutionsbiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Evolutionary Biology (hsv//eng)

Keyword

mtDNA genome
phylogeny
ancient DNA
next-generation sequencing
Biology
Biologi
Livets mångfald

Publication and Content Type

ref (subject category)
art (subject category)

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