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Prospective, Intern...
Prospective, International, Multisite Comparison of Platelet Isolation Techniques for Genome-Wide Transcriptomics : Communication from the SSC of the ISTH
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- Banerjee, Meenakshi (författare)
- University of Utah Molecular Medicine Program, Eccles Institute of Human Genetics, Salt Lake City, Utah, USA
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- Rowley, Jesse W. (författare)
- University of Utah Molecular Medicine Program, Eccles Institute of Human Genetics, Salt Lake City, Utah, USA; Department of Internal Medicine, University of Utah Health, Salt Lake City, Utah, USA
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- Stubben, Chris J. (författare)
- Bioinformatics Shared Resource, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, USA
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- Tolley, Neal D. (författare)
- University of Utah Molecular Medicine Program, Eccles Institute of Human Genetics, Salt Lake City, Utah, USA
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- Freson, Kathleen (författare)
- Department of Cardiovascular Sciences, Center for Molecular and Vascular Biology, KULeuven, Leuven, Belgium
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- Nelson, Benjamin (författare)
- University of Utah Molecular Medicine Program, Eccles Institute of Human Genetics, Salt Lake City, Utah, USA
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- Nagy, Béla (författare)
- Department of Laboratory Medicine, Faculty of Medicine, University of Debrecen, Debrecen, Hungary
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- Fejes, Zsolt (författare)
- Department of Laboratory Medicine, Faculty of Medicine, University of Debrecen, Debrecen, Hungary
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- Blair, Antoinette M. (författare)
- University of Utah Molecular Medicine Program, Eccles Institute of Human Genetics, Salt Lake City, Utah, USA
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- Turro, Ernest (författare)
- Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA
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- Gresele, Paolo (författare)
- Department of Medicine and Surgery, University of Perugia, Italy
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- Taranta, Giulia Ciarrocca (författare)
- Department of Medicine and Surgery, University of Perugia, Italy
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- Bury, Loredana (författare)
- Department of Medicine and Surgery, University of Perugia, Italy
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- Falcinelli, Emanuela (författare)
- Department of Medicine and Surgery, University of Perugia, Italy
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- Lordkipanidzé, Marie (författare)
- Research Center, Montreal Heart Institute, Montreal, Quebec, Canada; Faculty of Pharmacy, Université de Montréal, Montreal, Quebec, Canada
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- Alessi, Marie-Christine (författare)
- Cardiovascular and Nutrition Centre, C2VN, Aix Marseille Univ, INSERM, INRAE, Marseille, France
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- Johnson, Andrew D. (författare)
- Population Sci9ences Branch, Division of Intramural Research, National Heart, Lung and Blood Institute, Framingham, Massachusetts, USA; The Framingham Heart Study, Framingham, Massachusetts, USA
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- Bakchoul, Tamam (författare)
- Transfusion Medicine, Medical Faculty of Tubingen, University of Tubingen, Tubingen, Germany
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- Ramström, Sofia, 1973- (författare)
- Örebro universitet,Institutionen för medicinska vetenskaper,Cardiovascular Research Centre, School of Medical Sciences, Faculty of Medicine and Health, Örebro University, Örebro, Sweden
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- Frontini, Mattia (författare)
- Department of Clinical and Biomedical Sciences, University of Exeter Medical School, Faculty of Health and Life Sciences, RILD Building, Barrack Road, Exeter,UK
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- Camera, Marina (författare)
- Unit of Cell and Molecular Biology in Cardiovascular Diseases, Centro Cardiologico Monzino IRCCS, Milan, Italy; Department of Pharmaceutical Sciences, Università Degli Studi Di Milano, Milan, Italy
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- Brambilla, Marta (författare)
- Unit of Cell and Molecular Biology in Cardiovascular Diseases, Centro Cardiologico Monzino IRCCS, Milan, Italy
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- Campbell, Robert A. (författare)
- University of Utah Molecular Medicine Program, Eccles Institute of Human Genetics, Salt Lake City, Utah, USA; Department of Internal Medicine, University of Utah Health, Salt Lake City, Utah, USA
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- Rondina, Matthew T. (författare)
- University of Utah Molecular Medicine Program, Eccles Institute of Human Genetics, Salt Lake City, Utah, USA; Department of Internal Medicine, University of Utah Health, Salt Lake City, Utah, USA; George E. Wahlen Veterans Affairs Medical Center & GRECC, Salt Lake City, Utah, USA
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(creator_code:org_t)
- 2024
- 2024
- Engelska.
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Ingår i: Journal of Thrombosis and Haemostasis. - : John Wiley & Sons. - 1538-7933 .- 1538-7836.
- Relaterad länk:
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https://doi.org/10.1...
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
Ämnesord
Stäng
- Genome-wide platelet transcriptomics is increasingly used to uncover new aspects of platelet biology and as a diagnostic and prognostic tool. Nevertheless, platelet isolation methods for transcriptomic studies are not standardized, introducing challenges for cross-study comparisons, data integration, and replication. In this prospective multicenter study, called "Standardizing Platelet Transcriptomics for Discovery, Diagnostics, and Therapeutics in the Thrombosis and Hemostasis Community (STRIDE)" by the ISTH SSCs, we assessed how three of the most commonly used platelet isolation protocols influence metrics from next-generation bulk RNA sequencing and functional assays. Compared with washing alone, more stringent removal of leukocytes by anti-CD45 beads or PALLTM filters resulted in a sufficient quantity of RNA for next-generation sequencing and similar quality of RNA sequencing metrics. Importantly, stringent removal of leukocytes resulted in the lower relative expression of known leukocyte-specific genes and the higher relative expression of known platelet-specific genes. The results were consistent across enrolling sites, suggesting the techniques are transferrable and reproducible. Moreover, all three isolation techniques did not influence basal platelet reactivity, but agonist-induced integrin αIIbβ3 activation is reduced by anti-CD45 bead isolation compared to washing alone. In conclusion, the isolation technique chosen influences genome-wide transcriptional and functional assays in platelets. These results should help the research community make informed choices about platelet isolation techniques in their own platelet studies.
Ämnesord
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
Nyckelord
- Platelets
- leukocytes
- next generation RNA Seq
- platelet transcriptomics
Publikations- och innehållstyp
- ref (ämneskategori)
- art (ämneskategori)
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- Av författaren/redakt...
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Banerjee, Meenak ...
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Rowley, Jesse W.
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Stubben, Chris J ...
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Tolley, Neal D.
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Freson, Kathleen
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Nelson, Benjamin
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visa fler...
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Nagy, Béla
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Fejes, Zsolt
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Blair, Antoinett ...
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Turro, Ernest
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Gresele, Paolo
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Taranta, Giulia ...
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Bury, Loredana
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Falcinelli, Eman ...
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Lordkipanidzé, M ...
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Alessi, Marie-Ch ...
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Johnson, Andrew ...
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Bakchoul, Tamam
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Ramström, Sofia, ...
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Frontini, Mattia
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Camera, Marina
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Brambilla, Marta
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Campbell, Robert ...
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Rondina, Matthew ...
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