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Genomic, transcript...
Genomic, transcriptomic, and lipidomic profiling highlights the role of inflammation in individuals with low high-density lipoprotein cholesterol
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- Laurila, Pirkka-Pekka (författare)
- Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland; Public Health Genomics Unit, National Institute for Health and Welfare, Helsinki, Finland; Department of Medical Genetics, University of Helsinki, Helsinki, Finland
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- Surakka, Ida (författare)
- Institute for Molecular Medicine Finland, FIMM, University of Helsinki, Helsinki, Finland; Public Health Genomics Unit, National Institute for Health and Welfare, Helsinki, Finland
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- Sarin, Antti-Pekka (författare)
- Institute for Molecular Medicine Finland, FIMM, University of Helsinki, Helsinki, Finland; Public Health Genomics Unit, National Institute for Health and Welfare, Helsinki, Finland
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- Yetukuri, Laxman (författare)
- VTT Technical Research Centre of Finland, Espoo, Finland
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- Hyötyläinen, Tuulia, 1971- (författare)
- Örebro universitet,Institutionen för naturvetenskap och teknik,VTT Technical Research Centre of Finland, Espoo, Finland
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- Söderlund, Sanni (författare)
- Department of Medicine, Helsinki University Central Hospital, Helsinki, Finland
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- Naukkarinen, Jussi (författare)
- Public Health Genomics Unit, National Institute for Health and Welfare, Helsinki, Finland
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- Tang, Jing (författare)
- VTT Technical Research Centre of Finland, Espoo, Finland
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- Kettunen, Johannes (författare)
- Institute for Molecular Medicine Finland, FIMM, University of Helsinki, Helsinki, Finland; Public Health Genomics Unit, National Institute for Health and Welfare, Helsinki, Finland
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- Mirel, Daniel B (författare)
- Program in Medical and Population Genetics, Broad Institute, Cambridge MA, United States
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- Soronen, Jarkko (författare)
- Public Health Genomics Unit, National Institute for Health and Welfare, Helsinki, Finland
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- Lehtimäki, Terho (författare)
- Department of Clinical Chemistry, University of Tampere and Tampere University Hospital, Tampere, Finland
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- Ruokonen, Aimo (författare)
- Institute of Diagnostics, University of Oulu, Oulu, Finland
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- Ehnholm, Christian (författare)
- Public Health Genomics Unit, National Institute for Health and Welfare, Helsinki, Finland
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- Eriksson, Johan G. (författare)
- Department of General Practice and Primary Health Care, University of Helsinki, Helsinki, Finland; Unit of General Practice, Helsinki University Central Hospital, Helsinki, Finland; Folkhälsan Research Centre, Helsinki, Finland; Vasa Central Hospital, Vasa, FinlandM; Department of Health Promotion and Chronic Disease Prevention, National Institute for Health and Welfare, Helsinki, Finland
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- Salomaa, Veikko (författare)
- Department of Chronic Disease Prevention, National Institute for Health and Welfare, Helsinki, Finland
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- Jula, Antti (författare)
- Department of Chronic Disease Prevention, National Institute for Health and Welfare, Helsinki, Finland
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- Raitakari, Olli T (författare)
- Research Centre of Applied and Preventive Cardiovascular Medicine, University of Turku, Turku, Finland; Clinical Physiology, University of Turku, Turku University Hospital, Turku, Finland
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- Järvelin, Marjo-Riitta (författare)
- Department of Epidemiology and Biostatistics, School of Public Health, Imperial College London, London, United Kingdom; Institute of Health Sciences, University of Oulu, Oulu, Finland; Biocenter Oulu, University of Oulu, Oulu, Finland
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- Palotie, Aarno (författare)
- Institute for Molecular Medicine Finland, FIMM, University of Helsinki, Helsinki, Finland; Department of Medical Genetics, University of Helsinki, Helsinki, Finland; Genetic Epidemiology Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom; Program in Medical and Population Genetics, Broad Institute, Cambridge MA, United States
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Peltonen, Leena (författare)
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- Oresic, Matej, 1967- (författare)
- Örebro universitet,Institutionen för medicinska vetenskaper,VTT Technical Research Centre of Finland, Espoo, Finland
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- Jauhiainen, Matti (författare)
- Public Health Genomics Unit, National Institute for Health and Welfare, Helsinki, Finland
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- Taskinen, Marja-Riitta (författare)
- Department of Medicine, Helsinki University Central Hospital, Helsinki, Finland
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- Ripatti, Samuli (författare)
- Institute for Molecular Medicine Finland, FIMM, University of Helsinki, Helsinki, Finland; Public Health Genomics Unit, National Institute for Health and Welfare, Helsinki, Finland; Genetic Epidemiology Group, Wellcome Trust Sanger Institute, Cambridge, United Kingdom
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(creator_code:org_t)
- Lippincott Williams & Wilkins, 2013
- 2013
- Engelska.
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Ingår i: Arteriosclerosis, Thrombosis and Vascular Biology. - : Lippincott Williams & Wilkins. - 1079-5642 .- 1524-4636. ; 33:4, s. 847-857
- Relaterad länk:
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
Ämnesord
Stäng
- OBJECTIVE: Low high-density lipoprotein cholesterol (HDL-C) is associated with cardiometabolic pathologies. In this study, we investigate the biological pathways and individual genes behind low HDL-C by integrating results from 3 high-throughput data sources: adipose tissue transcriptomics, HDL lipidomics, and dense marker genotypes from Finnish individuals with low or high HDL-C (n=450).APPROACH AND RESULTS: In the pathway analysis of genetic data, we demonstrate that genetic variants within inflammatory pathways were enriched among low HDL-C associated single-nucleotide polymorphisms, and the expression of these pathways upregulated in the adipose tissue of low HDL-C subjects. The lipidomic analysis highlighted the change in HDL particle quality toward putatively more inflammatory and less vasoprotective state in subjects with low HDL-C, as evidenced by their decreased antioxidative plasmalogen contents. We show that the focal point of these inflammatory pathways seems to be the HLA region with its low HDL-associated alleles also associating with more abundant local transcript levels in adipose tissue, increased plasma vascular cell adhesion molecule 1 (VCAM1) levels, and decreased HDL particle plasmalogen contents, markers of adipose tissue inflammation, vascular inflammation, and HDL antioxidative potential, respectively. In a population-based look-up of the inflammatory pathway single-nucleotide polymorphisms in a large Finnish cohorts (n=11 211), no association of the HLA region was detected for HDL-C as quantitative trait, but with extreme HDL-C phenotypes, implying the presence of low or high HDL genes in addition to the population-genomewide association studies-identified HDL genes.CONCLUSIONS: Our study highlights the role of inflammation with a genetic component in subjects with low HDL-C and identifies novel cis-expression quantitative trait loci (cis-eQTL) variants in HLA region to be associated with low HDL-C.
Ämnesord
- MEDICIN OCH HÄLSOVETENSKAP -- Klinisk medicin -- Kardiologi (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Clinical Medicine -- Cardiac and Cardiovascular Systems (hsv//eng)
- MEDICIN OCH HÄLSOVETENSKAP -- Medicinska och farmaceutiska grundvetenskaper -- Medicinsk genetik (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Basic Medicine -- Medical Genetics (hsv//eng)
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Laurila, Pirkka- ...
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Surakka, Ida
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Sarin, Antti-Pek ...
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Yetukuri, Laxman
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Hyötyläinen, Tuu ...
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Söderlund, Sanni
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Naukkarinen, Jus ...
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Tang, Jing
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Kettunen, Johann ...
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Mirel, Daniel B
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Soronen, Jarkko
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Lehtimäki, Terho
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Ruokonen, Aimo
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Ehnholm, Christi ...
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Eriksson, Johan ...
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Salomaa, Veikko
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Jula, Antti
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Raitakari, Olli ...
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Järvelin, Marjo- ...
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Palotie, Aarno
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Peltonen, Leena
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Oresic, Matej, 1 ...
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Jauhiainen, Matt ...
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Taskinen, Marja- ...
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Ripatti, Samuli
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Arteriosclerosis ...
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Örebro universitet