Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes

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Fältnamn	Indikatorer	Metadata
000		21600naa a2203085 4500
001		oai:DiVA.org:liu-92743
003		SwePub
008		130520s2008 \| \|\|\|\|\|\|\|\|\|\|\|000 \|\|eng\|
024	7	a https://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-927432 URI
040		a (SwePub)liu
041		a engb eng
042		9 SwePub
072	7	a ref2 swepub-contenttype
072	7	a for2 swepub-publicationtype
100	1	a Klionsky, Daniel J.u University of Michigan, USA4 aut
245	1 0	a Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes
264	1	b Landes Bioscience,c 2008
338		a print2 rdacarrier
520		a Research in autophagy continues to accelerate,1 and as a result many new scientists are entering the field. Accordingly, it is important to establish a standard set of criteria for monitoring macroautophagy in different organisms. Recent reviews have described the range of assays that have been used for this purpose.2,3 There are many useful and convenient methods that can be used to monitor macroautophagy in yeast, but relatively few in other model systems, and there is much confusion regarding acceptable methods to measure macroautophagy in higher eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers of autophagosomes versus those that measure flux through the autophagy pathway; thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from fully functional autophagy that includes delivery to, and degradation within, lysosomes (in most higher eukaryotes) or the vacuole (in plants and fungi). Here, we present a set of guidelines for the selection and interpretation of the methods that can be used by investigators who are attempting to examine macroautophagy and related processes, as well as by reviewers who need to provide realistic and reasonable critiques of papers that investigate these processes. This set of guidelines is not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to verify an autophagic response.
653		a autolysosome; autophagosome; flux; lysosome; phagophore; stress; vacuole
653		a TECHNOLOGY
653		a TEKNIKVETENSKAP
700	1	a Abeliovich, Hagaiu Hebrew University of Jerusalem, Israel4 aut
700	1	a Agostinis, Patriziau Catholic University of Louvain, Belgium4 aut
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700	1	a Aliev, Giumrakchu University of Texas San Antonio, TX USA4 aut
700	1	a S. Askew, Davidu University of Cincinnati, USA4 aut
700	1	a Baba, Misuzuu Japan Womens University, Japan4 aut
700	1	a H. Baehrecke, Ericu University of Massachusetts, MA USA4 aut
700	1	a A. Bahr, Benu University of Connecticut, CT USA4 aut
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700	1	a A. Bamber, Bruceu University of Toledo, OH 43606 USA4 aut
700	1	a C. Bassham, Dianeu Iowa State University, IA USA Iowa State University, IA USA4 aut
700	1	a Bergamini, Ettoreu University of Pisa, Italy4 aut
700	1	a Bi, Xiaoningu Western University of Health Science, CA USA4 aut
700	1	a Biard-Piechaczyk, Martineu UM2, France4 aut
700	1	a S. Blum, Janiceu Indiana University, IN 46202 USA4 aut
700	1	a E. Breclesen, Daleu Bucks Institute Age Research, CA USA4 aut
700	1	a L. Brodsky, Jeffreyu University of Pittsburgh, PA 15260 USA Massachusetts Gen Hospital, MA USA4 aut
700	1	a H. Brumell, Johnu Hospital Sick Children, Canada4 aut
700	1	a Brunk, Ulf T.u Linköpings universitet,Farmakologi,Hälsouniversitetet4 aut0 (Swepub:liu)ulfbr20
700	1	a Bursch, Wilfriedu Medical University of Vienna, Austria4 aut
700	1	a Camougrand, Nadineu University of Bordeaux 2, France4 aut
700	1	a Cebollero, Eduardou CSIC, Spain4 aut
700	1	a Cecconi, Francescou University of Roma Tor Vergata, Italy University of Roma Tor Vergata, Italy4 aut
700	1	a Chen, Yingyuu Peking University, Peoples R China4 aut
700	1	a Chin, Lih-Shenu Emory University School of Medicine4 aut
700	1	a Choi, Augustineu Emory University, GA 30322 USA4 aut
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700	1	a Chung, Jongkyeongu University of Pittsburgh, PA USA Korea Adv Institute Science and Technology, South Korea4 aut
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700	1	a G. Clarke, Stevenu University of Calif Los Angeles, CA 90024 USA University of Calif Los Angeles, CA 90024 USA4 aut
700	1	a Clave, Corinneu University of Bordeaux 2, France4 aut
700	1	a L. Cleveland, Johnu Scripps Research Institute, FL USA4 aut
700	1	a Codogno, Patriceu University of Paris 11, France INSERM, France4 aut
700	1	a I. Colombo, Mariau University of Nacl Cuyo, Argentina4 aut
700	1	a Coto-Montes, Anau University of Oviedo, Spain4 aut
700	1	a M. Cregg, Jamesu Keck Grad Institute Appl Science, CA USA4 aut
700	1	a Maria Cuervo, Anau Albert Einstein Coll Med, NY 10467 USA4 aut
700	1	a Debnath, Jayantau University of Calif San Francisco, CA USA4 aut
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700	1	a B. Dennis, Patricku USN Medical Oncol, MD 20892 USA4 aut
700	1	a A. Dennis, Phillipu USN Medical Oncol, MD 20892 USA4 aut
700	1	a Deretic, Vojou University of New Mexico, NM 87131 USA4 aut
700	1	a J. Devenish, Rodneyu Monash University, Australia Monash University, Australia4 aut
700	1	a Di Sano, Federicau University of Roma Tor Vergata, Italy4 aut
700	1	a Fred Dice, J.u Tufts University, MA 02111 USA4 aut
700	1	a DiFiglia, Marianu Massachusetts Gen Hospital, MA USA4 aut
700	1	a Dinesh-Kumar, Savithrammau Yale University, CT USA4 aut
700	1	a W. Distelhorst, Clarku Case Western Reserve University, OH 44106 USA Case Western Reserve University, OH 44106 USA University Hospital Cleveland, OH 44106 USA Case Western Reserve University, OH 44106 USA4 aut
700	1	a Djavaheri-Mergny, Mojganu University of Paris 11, France INSERM, France4 aut
700	1	a C. Dorsey, Franku The Scripps Research Institute4 aut
700	1	a Droege, Wulfu Immunotec Research Ltd, Canada4 aut
700	1	a Dron, Michelu INRA, France4 aut
700	1	a A. Jr. Dunn, Williamu University of Florida, FL USA4 aut
700	1	a Duszenko, Michaelu University of Tubingen, Germany4 aut
700	1	a Tony Eissa, N.u Baylor University, TX 77030 USA4 aut
700	1	a Elazar, Zvulunu Weizmann Institute Science, Israel4 aut
700	1	a Esclatine, Audreyu University of Paris 11, France INSERM, France4 aut
700	1	a Eskelinen, Eeva-Liisau University of Helsinki, Finland4 aut
700	1	a Fesues, Laszlou University of Debrecen, Hungary University of Debrecen, Hungary4 aut
700	1	a D. Finley, Kimu Salk Institute Biol Studies, CA USA4 aut
700	1	a M. Fuentes, Joseu University of Extremadura, Spain4 aut
700	1	a Fueyo, Juanu University of Texas Houston, TX 77030 USA4 aut
700	1	a Fujisaki, Kozou Kagoshima University, Japan4 aut
700	1	a Galliot, Brigitteu University of Geneva, Switzerland4 aut
700	1	a Gao, Fen-Biaou University of Calif San Francisco, CA 94143 USA University of Calif San Francisco, CA 94143 USA4 aut
700	1	a A. Gewirtz, Davidu Virginia Commonwealth University, VA USA Virginia Commonwealth University, VA USA4 aut
700	1	a B. Gibson, Spenceru Manitoba Institute Cell Biol, Canada4 aut
700	1	a Gohla, Antjeu University of Dusseldorf, Germany4 aut
700	1	a L. Goldberg, Alfredu Harvard University, MA USA4 aut
700	1	a Gonzalez, Ramonu CSIC, Spain4 aut
700	1	a Gonzalez-Estevez, Cristinau University of Nottingham, England4 aut
700	1	a Gorski, Sharonu British Columbia Cancer Agency, Canada4 aut
700	1	a A. Gottlieb, Robertau San Diego State University, CA 92182 USA4 aut
700	1	a Haussinger, Dieteru University of Dusseldorf, Germany4 aut
700	1	a He, You-Wenu Duke University, NC USA4 aut
700	1	a Heidenreich, Kimu University of Colorado, CO USA4 aut
700	1	a A. Hill, Josephu University of Texas SW Medical Centre Dallas, TX 75390 USA4 aut
700	1	a Hoyer-Hansen, Mariau Danish Cancer Soc, Denmark Danish Cancer Soc, Denmark4 aut
700	1	a Hu, Xunu Zhejiang University, Peoples R China4 aut
700	1	a Huang, Wei-Pangu National Taiwan University, Taiwan4 aut
700	1	a Iwasaki, Akikou Yale University, CT USA4 aut
700	1	a Jaattela, Marjau University of Debrecen, Hungary University of Debrecen, Hungary4 aut
700	1	a T. Jackson, Williamu Medical Coll Wisconsin, WI 53226 USA4 aut
700	1	a Jiang, Xuejunu Mem Sloan Kettering Cancer Centre, NY 10021 USA4 aut
700	1	a Jin, Shengkanu University of Medical and Dent New Jersey, NJ 08854 USA4 aut
700	1	a Johansen, Terjeu University of Tromso, Norway4 aut
700	1	a U. Jung, Jaeu University of So Calif, CA USA4 aut
700	1	a Kadowaki, Motoniu Niigata University, Japan4 aut
700	1	a Kang, Chanheeu University of Texas SW Medical Centre Dallas, TX 75390 USA4 aut
700	1	a Kelekar, Ameetau University of Minnesota, MN USA4 aut
700	1	a H. Kessel, Davidu Wayne State University, MI USA4 aut
700	1	a A. K. W. Kiel, Janu University of Groningen, Netherlands4 aut
700	1	a Pyo Kim, Hongu University of Pittsburgh, PA USA4 aut
700	1	a Kimchi, Adiu Weizmann Institute Science, Israel4 aut
700	1	a J. Kinsella, Timothyu University Hospital Cleveland, OH 44106 USA4 aut
700	1	a Kiselyov, Kirillu University of Pittsburgh, PA 15260 USA4 aut
700	1	a Kitamoto, Katsuhikou University of Tokyo, Japan4 aut
700	1	a Knecht, Erwinu Centre Invest Principe Felipe, Spain4 aut
700	1	a Komatsu, Masaakiu Tokyo Metropolitan Institute Medical Science, Japan4 aut
700	1	a Kominami, Eikiu Juntendo University, Japan4 aut
700	1	a Kondo, Seijiu University of Texas MD Anderson Cancer Center4 aut
700	1	a L. Kovacs, Attilau University of Texas MD Anderson Cancer Centre, TX USA4 aut
700	1	a Kroemer, Guidou Eotvos Lorand University, Hungary Institute Gustave Roussy, France University of Paris 11, France4 aut
700	1	a Kuan, Chia-Yiu Cincinnati Childrens Hospital Research Fdn, OH USA4 aut
700	1	a Kumar, Rakeshu University of Penn, PA 19104 USA4 aut
700	1	a Kundu, Mondirau University of Laval, Canada4 aut
700	1	a Landry, Jacquesu Eastern Michigan University, MI 48197 USA4 aut
700	1	a Laporte, Marianneu Eastern Michigan University4 aut
700	1	a Le, Weidongu Shanghai Jiao Tong University, Peoples R China Chinese Academic Science, Peoples R China4 aut
700	1	a Lei, Huan-Yaou National Cheng Kung University, Taiwan4 aut
700	1	a J. Lenardo, Michaelu NIAID, MD USA4 aut
700	1	a Levine, Bethu University of Texas SW Medical Centre Dallas, TX 75390 USA University of Texas SW Medical Centre Dallas, TX 75390 USA4 aut
700	1	a Lieberman, Andrewu University of Michigan, MI USA4 aut
700	1	a Lim, Kah-Leongu National Institute Neurosci, Singapore4 aut
700	1	a Lin, Fu-Chengu Zhejiang University, Peoples R China4 aut
700	1	a Liou, Willisau Chang Gung University4 aut
700	1	a F. Liu, Leroyu University of Medical and Dent New Jersey, NJ 08854 USA National Research Centre Environm and Heatlh, Germany4 aut
700	1	a Lopez-Berestein, Gabrielu University of Texas MD Anderson Cancer Centre, TX USA4 aut
700	1	a Lopez-Otin, Carlosu University of Oviedo, Spain4 aut
700	1	a Lu, Bou Vanderbilt University, TN USA4 aut
700	1	a F. Macleod, Kayu University of Chicago, IL 60637 USA Ist Super Sanita, Italy4 aut
700	1	a Malorni, Walteru Istituto Superiore di Sanita4 aut
700	1	a Martinet, Wimu University of Antwerp, Belgium4 aut
700	1	a Matsuoka, Kenu Kyushu University, Japan4 aut
700	1	a Mautner, Josefu GSF-National Research Center for Environment and Health4 aut
700	1	a J. Meijer, Alfredu University of Amsterdam, Netherlands4 aut
700	1	a Melendez, Aliciau CUNY, NY USA4 aut
700	1	a Michels, Paulu Catholic University of Louvain, Belgium Catholic University of Louvain, Belgium4 aut
700	1	a Miotto, Giovanniu University of Padua, Italy4 aut
700	1	a P. Mistiaen, Wilhelmu University of Coll Antwerp, Belgium4 aut
700	1	a Mizushima, Noboruu Tokyo Medical and Dent University, Japan4 aut
700	1	a Mograbi, Bahariau INSERM, France IFR 50, France4 aut
700	1	a Monastyrska, Irynau University of Utrecht, Netherlands4 aut
700	1	a N. Moore, Michaelu Plymouth Marine Lab, England4 aut
700	1	a I. Moreira, Paulau Centre Neurosci and Cell Biol, Portugal4 aut
700	1	a Moriyasu, Yujiu Saitama University, Japan4 aut
700	1	a Motyl, Tomaszu Agriculture University of Warsaw, Poland4 aut
700	1	a Muenz, Christianu Rockefeller University, NY 10021 USA4 aut
700	1	a O. Murphy, Leonu Novartis Institute Biomed Research, MA USA4 aut
700	1	a I. Naqvi, Naweedu National University of Singapore, Singapore4 aut
700	1	a Neufeld, Thomasu University of Minnesota4 aut
700	1	a Nishino, Ichizou National Centre Neurol and Psychiat, Japan4 aut
700	1	a A. Nixon, Ralphu NYU, NY USA4 aut
700	1	a Noda, Takeshiu Osaka University, Japan4 aut
700	1	a Nuernberg, Berndu University of Dusseldorf, Germany4 aut
700	1	a Ogawa, Michinagau University of Tokyo, Japan4 aut
700	1	a L. Oleinick, Nancyu Case Western Reserve University, OH USA Case Western Reserve University, OH 44106 USA Case Western Reserve University, OH 44106 USA Case Western Reserve University, OH 44106 USA4 aut
700	1	a J. Olsen, Laurau University of Michigan, MI 48109 USA4 aut
700	1	a Ozpolat, Bulentu University of Texas MD Anderson Cancer Centre, TX USA4 aut
700	1	a Paglin, Shoshanau Chaim Sheba Medical Centre, Israel4 aut
700	1	a E. Palmer, Glenu Louisiana State University, LA USA4 aut
700	1	a Papassideri, Issidorau Department Cell Biol and Biophys, Greece4 aut
700	1	a Parkes, Milesu University of Cambridge, England4 aut
700	1	a H. Perlmutter, Davidu University of Pittsburgh, PA 15261 USA Childrens Hospital Pittsburgh, PA 15213 USA4 aut
700	1	a Perry, Georgeu University of Texas San Antonio, TX USA4 aut
700	1	a Piacentini, Maurou University of Roma Tor Vergata, Italy4 aut
700	1	a Pinkas-Kramarski, Ronitu Tel Aviv University, Israel4 aut
700	1	a Prescott, Marku Monash University, Australia4 aut
700	1	a Proikas-Cezanne, Tassulau University of Tubingen, Germany4 aut
700	1	a Raben, Ninau NIAMSD, MD USA4 aut
700	1	a Rami, Abdelhaqu Clin JWG University, Germany4 aut
700	1	a Reggiori, Fulviou University of Utrecht, Netherlands4 aut
700	1	a Rohrer, Baerbelu Medical University of S Carolina, SC 29425 USA4 aut
700	1	a C. Rubinsztein, Davidu Cambridge Institute Medical Research, England4 aut
700	1	a M. Ryan, Kevinu Beatson Institute Cancer Research, Scotland4 aut
700	1	a Sadoshima, Junichiu University of Medical and Dent New Jersey, NJ 07103 USA4 aut
700	1	a Sakagami, Hiroshiu Meikai University, Japan4 aut
700	1	a Sakai, Yasuyoshiu Kyoto University, Japan JST, Japan4 aut
700	1	a Sandri, Marcou University of Padua, Italy Venetan Institute Molecular Med, Italy4 aut
700	1	a Sasakawa, Chihirou University of Tokyo, Japan4 aut
700	1	a Sass, Miklosu University of Oslo, Norway4 aut
700	1	a Schneider, Claudiou Laboratorio Nazionale Consorzio Interuniversitario Biotecnologie4 aut
700	1	a O. Seglen, Peru University of Wyoming, WY 82071 USA4 aut
700	1	a Seleverstov, Oleksandru University of Oslo, Norway4 aut
700	1	a Settleman, Jeffreu Massachusetts General Hospital Cancer Center4 aut
700	1	a J. Shacka, Johnu University of Alabama Birmingham, AL 35294 USA4 aut
700	1	a M. Shapiro, Irvingu Thomas Jefferson University, PA 19107 USA4 aut
700	1	a Sibirny, Andreiu National Academic Science Ukraine, Ukraine4 aut
700	1	a C. M. Silva-Zacarin, Elaineu University of Federal Sao Carlos, Brazil4 aut
700	1	a Simon, Hans-Uweu University of Bern, Switzerland4 aut
700	1	a Simone, Cristianou Ist Ric Farmacol Mario Negri, Italy4 aut
700	1	a Simonsen, Anneu University of Oslo, Norway Norwegian Radium Hospital, Norway4 aut
700	1	a A. Smith, Marku Case Western Reserve University, OH 44106 USA4 aut
700	1	a Spanel-Borowski, Katharinau University of Leipzig, Germany4 aut
700	1	a Srinivas, Vickramu Thomas Jefferson University, PA 19107 USA4 aut
700	1	a Steeves, Meredithu Scripps Research Institute, FL USA4 aut
700	1	a Stenmark, Haraldu Norwegian Radium Hospital, Norway4 aut
700	1	a E. Stromhaug, Peru University of Missouri, MO USA4 aut
700	1	a S. Subauste, Carlosu Case Western Reserve University, OH USA Case Western Reserve University, OH USA4 aut
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700	1	a Sulzer, Davidu Columbia University, NY USA Columbia University, NY USA4 aut
700	1	a Suzuki, Toshihikou University of Ryukyus, Japan4 aut
700	1	a S. Swanson, Micheleu University of Michigan, MI 48109 USA4 aut
700	1	a Takeshita, Fumihikou Yokohama City University, Japan4 aut
700	1	a J. Talbot, Nicholas.u University of Exeter, England4 aut
700	1	a Talloczy, Zsoltu Columbia University, NY USA Columbia University, NY USA4 aut
700	1	a Tanaka, Keijiu Tokyo Metropolitan Institute Medical Science, Japan Tohoku University, Japan4 aut
700	1	a Tanaka, Kozou Tokyo Metropolitan Institute Medical Science, Japan Tohoku University, Japan4 aut
700	1	a Tanida, Iseiu National Institute Infect Disease, Japan4 aut
700	1	a S. Taylor, Grahamu University of Birmingham, England4 aut
700	1	a Paul Taylor, J.u University of Penn, PA 19104 USA4 aut
700	1	a Terman, Alexeiu Linköpings universitet,Geriatrik,Hälsouniversitetet4 aut0 (Swepub:liu)alete63
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700	1	a B. Thompson, Craigu University of Penn, PA 19104 USA4 aut
700	1	a Thumm, Michaelu University of Gottingen, Germany4 aut
700	1	a M. Tolkovsky, Avivau University of Cambridge, England4 aut
700	1	a A. Tooze, Sharonu Cancer Research UK London Research Institute, England4 aut
700	1	a Truant, Rayu McMaster University, Canada4 aut
700	1	a V. Tumanovska, Lesyau AA Bogomolets Physiol Institute, Ukraine4 aut
700	1	a Uchiyama, Yasuou Osaka University, Japan4 aut
700	1	a Ueno, Takashiu Juntendo University, Japan4 aut
700	1	a L. Uzcategui, Nestoru Central University of Venezuela, Venezuela4 aut
700	1	a van der Klei, Idau University of Groningen, Netherlands4 aut
700	1	a C. Vaquero, Evau Hospital Clin Barcelona, Spain4 aut
700	1	a Vellai, Tiboru Eotvos Lorand University, Hungary4 aut
700	1	a W. Vogel, Michaelu Maryland Psychiat Research Centre, MD 21228 USA4 aut
700	1	a Wang, Hong-Gangu H Lee Moffitt Cancer Centre and Research Institute, FL USA4 aut
700	1	a Webster, Paulu House Ear Research Institute, CA USA4 aut
700	1	a W. Wiley, Johnu University of Michigan, MI 48109 USA4 aut
700	1	a Xi, Zhijunu Peking University, Peoples R China4 aut
700	1	a Xiao, Gutianu University of Pittsburgh, PA USA4 aut
700	1	a Yahalom, Joachimu Memorial Sloan-Kettering Cancer Center4 aut
700	1	a Yang, Jin-Mingu University of Medical and Dent New Jersey, NJ USA4 aut
700	1	a Yap, Georgeu University of Medical and Dent New Jersey, NJ 07103 USA4 aut
700	1	a Yin, Xiao-Minu University of Pittsburgh, PA USA4 aut
700	1	a Yoshimori, Tamotsuu Osaka University, Japan4 aut
700	1	a Yu, Liu NIAID, MD USA4 aut
700	1	a Yue, Zhenyuu Mt Sinai School Med, NY USA4 aut
700	1	a Yuzaki, Michisukeu Keio University, Japan4 aut
700	1	a Zabirnyk, Olgau NCI, MD USA National Institute Heatlh, MD USA4 aut
700	1	a Zheng, Xiaoxiangu Zhejiang University, Peoples R China4 aut
700	1	a Zhu, Xiongweiu Case Western Reserve University, OH 44106 USA4 aut
700	1	a L. Deter, Russellu Baylor University, TX 77030 USA4 aut
700	1	a Tabas, Irau Columbia University, NY USA4 aut
710	2	a University of Michigan, USAb Hebrew University of Jerusalem, Israel4 org
773	0	t Autophagyd : Landes Bioscienceg 4:2, s. 151-175q 4:2<151-175x 1554-8627x 1554-8635
856	4 8	u https://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-92743

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Artiklar i publikationen: Autophagy

Av lärosätet: Linköpings universitet

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