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Sökning: WFRF:(Shahzad Muhammad) > The complete chloro...

LIBRIS Formathandbok  (Information om MARC21)
FältnamnIndikatorerMetadata
00003681naa a2200517 4500
001oai:DiVA.org:umu-176693
003SwePub
008201114s2017 | |||||||||||000 ||eng|
0247 a https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-1766932 URI
0247 a https://doi.org/10.3389/fpls.2017.003042 DOI
040 a (SwePub)umu
041 a engb eng
042 9 SwePub
072 7a ref2 swepub-contenttype
072 7a art2 swepub-publicationtype
1001 a Asaf, Sajjad4 aut
2451 0a The complete chloroplast genome of wild rice (Oryza minuta) and its comparison to related species
264 c 2017-03-07
264 1b Frontiers Media S.A.c 2017
338 a electronic2 rdacarrier
520 a Oryza minuta, a tetraploid wild relative of cultivated rice (family Poaceae), possesses a BBCC genome and contains genes that confer resistance to bacterial blight (BB) and white-backed (WBPH) and brown (BPH) plant hoppers. Based on the importance of this wild species, this study aimed to understand the phylogenetic relationships of O. minuta with other Oryza species through an in-depth analysis of the composition and diversity of the chloroplast (cp) genome. The analysis revealed a cp genome size of 135,094 bp with a typical quadripartite structure and consisting of a pair of inverted repeats separated by small and large single copies, 139 representative genes, and 419 randomly distributed microsatellites. The genomic organization, gene order, GC content and codon usage are similar to those of typical angiosperm cp genomes. Approximately 30 forward, 28 tandem and 20 palindromic repeats were detected in the O. minuta cp genome. Comparison of the complete O. minuta cp genome with another eleven Oryza species showed a high degree of sequence similarity and relatively high divergence of intergenic spacers. Phylogenetic analyses were conducted based on the complete genome sequence, 65 shared genes and matK gene showed same topologies and O. minuta forms a single clade with parental O. punctata. Thus, the complete O. minuta cp genome provides interesting insights and valuable information that can be used to identify related species and reconstruct its phylogeny.
650 7a LANTBRUKSVETENSKAPERx Bioteknologi med applikationer på växter och djurx Växtbioteknologi0 (SwePub)404012 hsv//swe
650 7a AGRICULTURAL SCIENCESx Agricultural Biotechnologyx Plant Biotechnology0 (SwePub)404012 hsv//eng
653 a wild rice (Oryza minuta)
653 a cp genome
653 a repeat analysis
653 a codon usage
653 a phylogeny
653 a sequence divergence
653 a SSRs
7001 a Waqas, Muhammad4 aut
7001 a Khan, Abdul L.4 aut
7001 a Khan, Muhammad A.4 aut
7001 a Kang, Sang-Mo4 aut
7001 a Imran, Qari Muhammadu School of Applied Biosciences, Kyungpook National University, Daegu, South Korea4 aut0 (Swepub:umu)muim0025
7001 a Shahzad, Raheem4 aut
7001 a Bilal, Saqib4 aut
7001 a Yun, Byung-Wook4 aut
7001 a Lee, In-Jung4 aut
7102 a School of Applied Biosciences, Kyungpook National University, Daegu, South Korea4 org
7730 t Frontiers in Plant Scienced : Frontiers Media S.A.g 8q 8x 1664-462X
8564 u https://doi.org/10.3389/fpls.2017.00304y Fulltext
8564 u https://umu.diva-portal.org/smash/get/diva2:1500957/FULLTEXT01.pdfx primaryx Raw objecty fulltext:print
8564 u https://www.frontiersin.org/articles/10.3389/fpls.2017.00304/pdf
8564 8u https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-176693
8564 8u https://doi.org/10.3389/fpls.2017.00304

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