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WFRF:(Alexandersson Erik)
 

Sökning: WFRF:(Alexandersson Erik) > Quantitative proteo...

LIBRIS Formathandbok  (Information om MARC21)
FältnamnIndikatorerMetadata
00005323naa a2200577 4500
001oai:lup.lub.lu.se:b6600ba5-244e-4d8a-9004-d45723641495
003SwePub
008160401s2014 | |||||||||||000 ||eng|
009oai:slubar.slu.se:60948
0247 a https://lup.lub.lu.se/record/46091092 URI
0247 a https://doi.org/10.1186/1471-2164-15-4972 DOI
0247 a https://res.slu.se/id/publ/609482 URI
040 a (SwePub)lud (SwePub)slu
041 a engb eng
042 9 SwePub
072 7a art2 swepub-publicationtype
072 7a ref2 swepub-contenttype
1001 a Ali, Ashfaqu Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Växtskyddsbiologi,Department of Plant Protection Biology,Lund University4 aut0 (Swepub:slu)46813
2451 0a Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions
264 c 2014-06-19
264 1b Springer Science and Business Media LLC,c 2014
520 a Background: In order to get global molecular understanding of one of the most important crop diseases worldwide, we investigated compatible and incompatible interactions between Phytophthora infestans and potato (Solanum tuberosum). We used the two most field-resistant potato clones under Swedish growing conditions, which have the greatest known local diversity of P. infestans populations, and a reference compatible cultivar. Results: Quantitative label-free proteomics of 51 apoplastic secretome samples (PXD000435) in combination with genome-wide transcript analysis by 42 microarrays (E-MTAB-1515) were used to capture changes in protein abundance and gene expression at 6, 24 and 72 hours after inoculation with P. infestans. To aid mass spectrometry analysis we generated cultivar-specific RNA-seq data (E-MTAB-1712), which increased peptide identifications by 17%. Components induced only during incompatible interactions, which are candidates for hypersensitive response initiation, include a Kunitz-like protease inhibitor, transcription factors and an RCR3-like protein. More secreted proteins had lower abundance in the compatible interaction compared to the incompatible interactions. Based on this observation and because the well-characterized effector-target C14 protease follows this pattern, we suggest 40 putative effector targets. Conclusions: In summary, over 17000 transcripts and 1000 secreted proteins changed in abundance in at least one time point, illustrating the dynamics of plant responses to a hemibiotroph. Half of the differentially abundant proteins showed a corresponding change at the transcript level. Many putative hypersensitive and effector-target proteins were single representatives of large gene families.
650 7a NATURVETENSKAPx Biologix Genetik0 (SwePub)106092 hsv//swe
650 7a NATURAL SCIENCESx Biological Sciencesx Genetics0 (SwePub)106092 hsv//eng
650 7a NATURVETENSKAPx Biologix Biokemi och molekylärbiologi0 (SwePub)106022 hsv//swe
650 7a NATURAL SCIENCESx Biological Sciencesx Biochemistry and Molecular Biology0 (SwePub)106022 hsv//eng
653 a Potato
653 a Desiree
653 a Sarpo Mira
653 a SW93-1015
653 a Secretome
653 a Apoplast
653 a Resistance
653 a Hypersensitive response
653 a Phytophthora infestans
7001 a Alexandersson, Eriku Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Växtskyddsbiologi,Department of Plant Protection Biology4 aut0 (Swepub:slu)47478
7001 a Sandin, Marianneu Lund University,Lunds universitet,Institutionen för immunteknologi,Institutioner vid LTH,Lunds Tekniska Högskola,Department of Immunotechnology,Departments at LTH,Faculty of Engineering, LTH4 aut0 (Swepub:lu)immu-mis
7001 a Resjö, Svanteu Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Växtskyddsbiologi,Department of Plant Protection Biology4 aut0 (Swepub:slu)46984
7001 a Lenman, Maritu Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Växtskyddsbiologi,Department of Plant Protection Biology4 aut0 (Swepub:slu)48908
7001 a Hedley, Pete4 aut
7001 a Levander, Fredriku Lund University,Lunds universitet,Institutionen för immunteknologi,Institutioner vid LTH,Lunds Tekniska Högskola,Department of Immunotechnology,Departments at LTH,Faculty of Engineering, LTH4 aut0 (Swepub:lu)tmb-fle
7001 a Andreasson, Eriku Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Växtskyddsbiologi,Department of Plant Protection Biology4 aut0 (Swepub:slu)48766
7102 a Sveriges lantbruksuniversitetb Växtskyddsbiologi4 org
7102 a Sveriges lantbruksuniversitet
7730 t BMC Genomicsd : Springer Science and Business Media LLCg 15q 15x 1471-2164
8564 u http://dx.doi.org/10.1186/1471-2164-15-497x freey FULLTEXT
8564 u https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/1471-2164-15-497
8564 u https://pub.epsilon.slu.se/id/eprint/17949/contentsx primaryx Raw objectx freey FULLTEXT
8564 8u https://lup.lub.lu.se/record/4609109
8564 8u https://doi.org/10.1186/1471-2164-15-497
8564 8u https://res.slu.se/id/publ/60948

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