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Phylogenomics, divergence times and notes of orders in Basidiomycota

He, Mao Qiang (author)
Cao, Bin (author)
Liu, Fei (author)
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Boekhout, Teun (author)
Denchev, Teodor T. (author)
Schoutteten, Nathan (author)
Denchev, Cvetomir M. (author)
Kemler, Martin (author)
Gorjón, Sergio P. (author)
Begerow, Dominik (author)
Valenzuela, Ricardo (author)
Davoodian, Naveed (author)
Niskanen, Tuula (author)
Vizzini, Alfredo (author)
Redhead, Scott A. (author)
Ramírez-Cruz, Virginia (author)
Papp, Viktor (author)
Dudka, Vasiliy A. (author)
Dutta, Arun Kumar (author)
García-Sandoval, Ricardo (author)
Liu, Xin Zhan (author)
Kijpornyongpan, Teeratas (author)
Savchenko, Anton (author)
Tedersoo, Leho (author)
Theelen, Bart (author)
Trierveiler-Pereira, Larissa (author)
Wu, Fang (author)
Zamora, Juan Carlos (author)
Zeng, Xiang Yu (author)
Zhou, Li Wei (author)
Liu, Shi Liang (author)
Ghobad-Nejhad, Masoomeh (author)
Giachini, Admir J. (author)
Li, Guo Jie (author)
Kakishima, Makoto (author)
Olariaga, Ibai (author)
Haelewaters, Danny (author)
Sulistyo, Bobby (author)
Sugiyama, Junta (author)
Svantesson, Sten (author)
Yurkov, Andrey (author)
Alvarado, Pablo (author)
Antonín, Vladimír (author)
da Silva, André Felipe (author)
Druzhinina, Irina (author)
Gibertoni, Tatiana B. (author)
Guzmán-Dávalos, Laura (author)
Justo, Alfredo (author)
Karunarathna, Samantha C. (author)
Galappaththi, Mahesh C.A. (author)
Toome-Heller, Merje (author)
Hosoya, Tsuyoshi (author)
Liimatainen, Kare (author)
Márquez, Rodrigo (author)
Mešić, Armin (author)
Moncalvo, Jean Marc (author)
Nagy, László G. (author)
Varga, Torda (author)
Orihara, Takamichi (author)
Raymundo, Tania (author)
Salcedo, Isabel (author)
Silva-Filho, Alexandre G.S. (author)
Tkalčec, Zdenko (author)
Wartchow, Felipe (author)
Zhao, Chang Lin (author)
Bau, Tolgor (author)
Cabarroi-Hernández, Milay (author)
Cortés-Pérez, Alonso (author)
Decock, Cony (author)
De Lange, Ruben (author)
Weiss, Michael (author)
Menolli, Nelson (author)
Nilsson, R. Henrik, 1976 (author)
Gothenburg University,Göteborgs universitet,Institutionen för biologi och miljövetenskap,Department of Biological and Environmental Sciences
Fan, Yu Guang (author)
Verbeken, Annemieke (author)
Gafforov, Yusufjon (author)
Meiras-Ottoni, Angelina (author)
Mendes-Alvarenga, Renato L. (author)
Zeng, Nian Kai (author)
Wu, Qi (author)
Hyde, Kevin D. (author)
Kirk, Paul M. (author)
Zhao, Rui Lin (author)
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 (creator_code:org_t)
2024
2024
English.
In: Fungal Diversity. - 1560-2745 .- 1878-9129. ; 126, s. 127-406
  • Journal article (peer-reviewed)
Abstract Subject headings
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  • Basidiomycota is one of the major phyla in the fungal tree of life. The outline of Basidiomycota provides essential taxonomic information for researchers and workers in mycology. In this study, we present a time-framed phylogenomic tree with 487 species of Basidiomycota from 127 families, 47 orders, 14 classes and four subphyla; we update the outline of Basidiomycota based on the phylogenomic relationships and the taxonomic studies since 2019; and we provide notes for each order and discuss the history, defining characteristics, evolution, justification of orders, problems, significance, and plates. Our phylogenomic analysis suggests that the subphyla diverged in a time range of 443–490 Myr (million years), classes in a time range of 312–412 Myr, and orders in a time range of 102–361 Myr. Families diverged in a time range of 50–289 Myr, 76–224 Myr, and 62–156 Myr in Agaricomycotina, Pucciniomycotina, and Ustilaginomycotina, respectively. Based on the phylogenomic relationships and divergence times, we propose a new suborder Mycenineae in Agaricales to accommodate Mycenaceae. In the current outline of Basidiomycota, there are four subphyla, 20 classes, 77 orders, 297 families, and 2134 genera accepted. When building a robust taxonomy of Basidiomycota in the genomic era, the generation of molecular phylogenetic data has become relatively easier. Finding phenotypical characters, especially those that can be applied for identification and classification, however, has become increasingly challenging.

Subject headings

NATURVETENSKAP  -- Biologi -- Evolutionsbiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Evolutionary Biology (hsv//eng)
NATURVETENSKAP  -- Biologi -- Mikrobiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Microbiology (hsv//eng)
NATURVETENSKAP  -- Biologi -- Botanik (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Botany (hsv//eng)
NATURVETENSKAP  -- Biologi -- Biologisk systematik (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Biological Systematics (hsv//eng)
NATURVETENSKAP  -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
NATURVETENSKAP  -- Biologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences (hsv//eng)

Keyword

Classification
Fungi
Molecular clock
Systematics
Taxonomy

Publication and Content Type

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art (subject category)

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By the author/editor
He, Mao Qiang
Cao, Bin
Liu, Fei
Boekhout, Teun
Denchev, Teodor ...
Schoutteten, Nat ...
show more...
Denchev, Cvetomi ...
Kemler, Martin
Gorjón, Sergio P ...
Begerow, Dominik
Valenzuela, Rica ...
Davoodian, Navee ...
Niskanen, Tuula
Vizzini, Alfredo
Redhead, Scott A ...
Ramírez-Cruz, Vi ...
Papp, Viktor
Dudka, Vasiliy A ...
Dutta, Arun Kuma ...
García-Sandoval, ...
Liu, Xin Zhan
Kijpornyongpan, ...
Savchenko, Anton
Tedersoo, Leho
Theelen, Bart
Trierveiler-Pere ...
Wu, Fang
Zamora, Juan Car ...
Zeng, Xiang Yu
Zhou, Li Wei
Liu, Shi Liang
Ghobad-Nejhad, M ...
Giachini, Admir ...
Li, Guo Jie
Kakishima, Makot ...
Olariaga, Ibai
Haelewaters, Dan ...
Sulistyo, Bobby
Sugiyama, Junta
Svantesson, Sten
Yurkov, Andrey
Alvarado, Pablo
Antonín, Vladimí ...
da Silva, André ...
Druzhinina, Irin ...
Gibertoni, Tatia ...
Guzmán-Dávalos, ...
Justo, Alfredo
Karunarathna, Sa ...
Galappaththi, Ma ...
Toome-Heller, Me ...
Hosoya, Tsuyoshi
Liimatainen, Kar ...
Márquez, Rodrigo
Mešić, Armin
Moncalvo, Jean M ...
Nagy, László G.
Varga, Torda
Orihara, Takamic ...
Raymundo, Tania
Salcedo, Isabel
Silva-Filho, Ale ...
Tkalčec, Zdenko
Wartchow, Felipe
Zhao, Chang Lin
Bau, Tolgor
Cabarroi-Hernánd ...
Cortés-Pérez, Al ...
Decock, Cony
De Lange, Ruben
Weiss, Michael
Menolli, Nelson
Nilsson, R. Henr ...
Fan, Yu Guang
Verbeken, Annemi ...
Gafforov, Yusufj ...
Meiras-Ottoni, A ...
Mendes-Alvarenga ...
Zeng, Nian Kai
Wu, Qi
Hyde, Kevin D.
Kirk, Paul M.
Zhao, Rui Lin
show less...
About the subject
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
and Evolutionary Bio ...
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
and Microbiology
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
and Botany
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
and Biological Syste ...
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
and Bioinformatics a ...
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
Articles in the publication
Fungal Diversity
By the university
University of Gothenburg

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