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A global metagenomi...
A global metagenomic map of urban microbiomes and antimicrobial resistance
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- Danko, David (author)
- Weill Cornell Medicine
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- Bezdan, Daniela (author)
- University Hospital of Tubingen
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- Elhaik, Eran (author)
- Lund University,Lunds universitet,Molekylär cellbiologi,Biologiska institutionen,Naturvetenskapliga fakulteten,Bioinformatik,Forskargrupper vid Lunds universitet,Molecular Cell Biology,Department of Biology,Faculty of Science,Bioinformatics,Lund University Research Groups,Weill Cornell Medicine
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- Ahsanuddin, Sofia (author)
- Icahn School of Medicine at Mount Sinai
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Bhattacharya, Chandrima (author)
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- Butler, Daniel J. (author)
- Weill Cornell Medicine Feil Family Brain & Mind Research Institute
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- Chng, Kern Rei (author)
- A*Star, Genome Institute of Singapore (GIS)
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- Donnellan, Daisy (author)
- Weill Cornell Medicine
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- Hecht, Jochen (author)
- Barcelona Institute of Science and Technology
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- Jackson, Katelyn (author)
- Weill Cornell Medicine
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- Kuchin, Katerina (author)
- Weill Cornell Medicine
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- Karasikov, Mikhail (author)
- Children's University Hospital, Zurich
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- Lyons, Abigail (author)
- Weill Cornell Medicine
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- Mak, Lauren (author)
- Weill Cornell Medicine
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- Meleshko, Dmitry (author)
- Weill Cornell Medicine
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- Mustafa, Harun (author)
- Children's University Hospital, Zurich
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- Mutai, Beth (author)
- Kenya Medical Research Institute - Kisumu
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- Neches, Russell Y. (author)
- Joint Genome Institute (JGI)
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- Ng, Amanda (author)
- A*Star, Genome Institute of Singapore (GIS)
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- Nikolayeva, Olga (author)
- Independent Researcher
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- Nikolayeva, Tatyana (author)
- Independent Researcher
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- Png, Eileen (author)
- A*Star, Genome Institute of Singapore (GIS)
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- Ryon, Krista A. (author)
- Weill Cornell Medicine
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- Sanchez, Jorge L. (author)
- Weill Cornell Medicine
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- Shaaban, Heba (author)
- Weill Cornell Medicine
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- Sierra, Maria A. (author)
- Weill Cornell Medicine
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- Thomas, Dominique (author)
- Weill Cornell Medicine
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- Young, Ben (author)
- Weill Cornell Medicine
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- Abudayyeh, Omar O. (author)
- Massachusetts Institute of Technology
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- Alicea, Josue (author)
- Weill Cornell Medicine
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- Bhattacharyya, Malay (author)
- Indian Statistical Institute, Kolkata
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- Blekhman, Ran (author)
- University of Minnesota
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- Castro-Nallar, Eduardo (author)
- Andrés Bello National University
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- Cañas, Ana M. (author)
- Weill Cornell Medicine
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Chatziefthimiou, Aspassia D. (author)
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- Crawford, Robert W. (author)
- California State University
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- De Filippis, Francesca (author)
- University of Naples Federico II
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- Deng, Youping (author)
- University of Hawai'i at Hilo
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- Desnues, Christelle (author)
- Mediterranean Institute of Oceanography, Marseille
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- Dias-Neto, Emmanuel (author)
- A. C. Camargo Cancer Center
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- Dybwad, Marius (author)
- Norwegian Defence Research Establishment
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Elhaik, Eran (author)
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- Ercolini, Danilo (author)
- University of Naples Federico II
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- Frolova, Alina (author)
- Kyiv Academic University
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- Gankin, Dennis (author)
- Massachusetts Institute of Technology
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- Gootenberg, Jonathan S. (author)
- Massachusetts Institute of Technology
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- Graf, Alexandra B. (author)
- University of Vienna
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- Green, David C. (author)
- King's College London
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- Hajirasouliha, Iman (author)
- Weill Cornell Medicine
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Hastings, Jaden J. A. (author)
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Hernandez, Mark (author)
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Iraola, Gregorio (author)
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Jang, Soojin (author)
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Kahles, Andre (author)
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Kelly, Frank J. (author)
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Knights, Kaymisha (author)
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Kyrpides, Nikos C. (author)
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Łabaj, Paweł P. (author)
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Lee, Patrick K. H. (author)
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Leung, Marcus H. Y. (author)
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- Ljungdahl, Per O. (author)
- Stockholms universitet,Institutionen för molekylär biovetenskap, Wenner-Grens institut
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Mason-Buck, Gabriella (author)
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McGrath, Ken (author)
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Meydan, Cem (author)
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Mongodin, Emmanuel F. (author)
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Moraes, Milton Ozorio (author)
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Nagarajan, Niranjan (author)
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Nieto-Caballero, Marina (author)
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Noushmehr, Houtan (author)
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Oliveira, Manuela (author)
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Ossowski, Stephan (author)
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Osuolale, Olayinka O. (author)
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Özcan, Orhan (author)
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Paez-Espino, David (author)
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Rascovan, Nicolás (author)
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Richard, Hugues (author)
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Rätsch, Gunnar (author)
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Schriml, Lynn M. (author)
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Semmler, Torsten (author)
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Sezerman, Osman U. (author)
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Shi, Leming (author)
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Shi, Tieliu (author)
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Siam, Rania (author)
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Song, Le Huu (author)
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Suzuki, Haruo (author)
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Court, Denise Syndercombe (author)
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Tighe, Scott W. (author)
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Tong, Xinzhao (author)
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- Udekwu, Klas (author)
- Sveriges lantbruksuniversitet,Stockholms universitet,Institutionen för molekylär biovetenskap, Wenner-Grens institut,Swedish University of Agricultural Sciences, Sweden,Institutionen för vatten och miljö,Department of Aquatic Sciences and Assessment,Stockholm University
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Ugalde, Juan A. (author)
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Valentine, Brandon (author)
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Vassilev, Dimitar (author)
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Vayndorf, Elena M. (author)
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Velavan, Thirumalaisamy P. (author)
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- Wu, Jun (author)
- East China Normal University
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Zambrano, Maria M. (author)
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Zhu, Jifeng (author)
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Zhu, Sibo (author)
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Mason, Christopher E. (author)
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(creator_code:org_t)
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- Elsevier BV, 2021
- 2021
- English.
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In: Cell. - : Elsevier BV. - 0092-8674 .- 1097-4172. ; 184:13, s. 3376-3393
- Related links:
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https://doi.org/10.1...
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http://www.cell.com/...
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http://dx.doi.org/10... (free)
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https://pub.epsilon.... (primary) (Raw object) (free)
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https://urn.kb.se/re...
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https://doi.org/10.1...
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http://kipublication...
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https://lup.lub.lu.s...
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https://res.slu.se/i...
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Abstract
Subject headings
Close
- We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, antimicrobial resistance (AMR) markers, and genetic elements, including 10,928 viruses, 1,302 bacteria, 2 archaea, and 838,532 CRISPR arrays not found in reference databases. We identified 4,246 known species of urban microorganisms and a consistent set of 31 species found in 97% of samples that were distinct from human commensal organisms. Profiles of AMR genes varied widely in type and density across cities. Cities showed distinct microbial taxonomic signatures that were driven by climate and geographic differences. These results constitute a high-resolution global metagenomic atlas that enables discovery of organisms and genes, highlights potential public health and forensic applications, and provides a culture-independent view of AMR burden in cities.
Subject headings
- NATURVETENSKAP -- Biologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences (hsv//eng)
- NATURVETENSKAP -- Biologi -- Mikrobiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Microbiology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
Publication and Content Type
- ref (subject category)
- art (subject category)
Find in a library
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Cell
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To the university's database
- By the author/editor
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Danko, David
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Bezdan, Daniela
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Elhaik, Eran
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Ahsanuddin, Sofi ...
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Bhattacharya, Ch ...
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Butler, Daniel J ...
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show more...
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Chng, Kern Rei
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Donnellan, Daisy
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Hecht, Jochen
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Jackson, Katelyn
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Kuchin, Katerina
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Karasikov, Mikha ...
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Lyons, Abigail
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Mak, Lauren
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Meleshko, Dmitry
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Mustafa, Harun
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Mutai, Beth
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Neches, Russell ...
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Ng, Amanda
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Nikolayeva, Olga
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Nikolayeva, Taty ...
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Png, Eileen
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Ryon, Krista A.
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Sanchez, Jorge L ...
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Shaaban, Heba
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Sierra, Maria A.
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Thomas, Dominiqu ...
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Young, Ben
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Abudayyeh, Omar ...
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Alicea, Josue
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Bhattacharyya, M ...
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Blekhman, Ran
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Castro-Nallar, E ...
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Cañas, Ana M.
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Chatziefthimiou, ...
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Crawford, Robert ...
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De Filippis, Fra ...
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Deng, Youping
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Desnues, Christe ...
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Dias-Neto, Emman ...
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Dybwad, Marius
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Ercolini, Danilo
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Frolova, Alina
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Gankin, Dennis
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Gootenberg, Jona ...
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Graf, Alexandra ...
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Green, David C.
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Hajirasouliha, I ...
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Hastings, Jaden ...
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Hernandez, Mark
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Iraola, Gregorio
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Jang, Soojin
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Kahles, Andre
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Kelly, Frank J.
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Knights, Kaymish ...
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Kyrpides, Nikos ...
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Łabaj, Paweł P.
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Lee, Patrick K. ...
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Leung, Marcus H. ...
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Ljungdahl, Per O ...
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Mason-Buck, Gabr ...
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McGrath, Ken
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Meydan, Cem
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Mongodin, Emmanu ...
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Moraes, Milton O ...
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Nagarajan, Niran ...
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Nieto-Caballero, ...
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Noushmehr, Houta ...
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Oliveira, Manuel ...
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Ossowski, Stepha ...
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Osuolale, Olayin ...
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Özcan, Orhan
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Paez-Espino, Dav ...
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Rascovan, Nicolá ...
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Richard, Hugues
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Rätsch, Gunnar
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Schriml, Lynn M.
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Semmler, Torsten
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Sezerman, Osman ...
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Shi, Leming
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Shi, Tieliu
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Siam, Rania
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Song, Le Huu
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Suzuki, Haruo
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Court, Denise Sy ...
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Tighe, Scott W.
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Tong, Xinzhao
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Udekwu, Klas
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Ugalde, Juan A.
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Valentine, Brand ...
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Vassilev, Dimita ...
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Vayndorf, Elena ...
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Velavan, Thiruma ...
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Wu, Jun
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Zambrano, Maria ...
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Zhu, Jifeng
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Zhu, Sibo
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Mason, Christoph ...
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- About the subject
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Microbiology
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Bioinformatics a ...
- Articles in the publication
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Cell
- By the university
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Stockholm University
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Karolinska Institutet
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Lund University
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Swedish University of Agricultural Sciences