A global metagenomic map of urban microbiomes and antimicrobial resistance

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Fältnamn	Indikatorer	Metadata
000		09468naa a2201669 4500
001		oai:DiVA.org:su-196175
003		SwePub
008		210907s2021 \| \|\|\|\|\|\|\|\|\|\|\|000 \|\|eng\|
009		oai:prod.swepub.kib.ki.se:147016894
009		oai:lup.lub.lu.se:7304c899-1454-4879-92fc-774e334c8248
009		oai:slubar.slu.se:113028
024	7	a https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-1961752 URI
024	7	a https://doi.org/10.1016/j.cell.2021.05.0022 DOI
024	7	a http://kipublications.ki.se/Default.aspx?queryparsed=id:1470168942 URI
024	7	a https://lup.lub.lu.se/record/7304c899-1454-4879-92fc-774e334c82482 URI
024	7	a https://res.slu.se/id/publ/1130282 URI
040		a (SwePub)sud (SwePub)kid (SwePub)lud (SwePub)slu
041		a engb eng
042		9 SwePub
072	7	a ref2 swepub-contenttype
072	7	a art2 swepub-publicationtype
100	1	a Danko, Davidu Weill Cornell Medicine4 aut
245	1 0	a A global metagenomic map of urban microbiomes and antimicrobial resistance
264	1	b Elsevier BV,c 2021
338		a print2 rdacarrier
520		a We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, antimicrobial resistance (AMR) markers, and genetic elements, including 10,928 viruses, 1,302 bacteria, 2 archaea, and 838,532 CRISPR arrays not found in reference databases. We identified 4,246 known species of urban microorganisms and a consistent set of 31 species found in 97% of samples that were distinct from human commensal organisms. Profiles of AMR genes varied widely in type and density across cities. Cities showed distinct microbial taxonomic signatures that were driven by climate and geographic differences. These results constitute a high-resolution global metagenomic atlas that enables discovery of organisms and genes, highlights potential public health and forensic applications, and provides a culture-independent view of AMR burden in cities.
650	7	a NATURVETENSKAPx Biologi0 (SwePub)1062 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciences0 (SwePub)1062 hsv//eng
650	7	a NATURVETENSKAPx Biologix Mikrobiologi0 (SwePub)106062 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciencesx Microbiology0 (SwePub)106062 hsv//eng
650	7	a NATURVETENSKAPx Biologix Bioinformatik och systembiologi0 (SwePub)106102 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciencesx Bioinformatics and Systems Biology0 (SwePub)106102 hsv//eng
700	1	a Bezdan, Danielau University Hospital of Tubingen4 aut
700	1	a Elhaik, Eranu Lund University,Lunds universitet,Molekylär cellbiologi,Biologiska institutionen,Naturvetenskapliga fakulteten,Bioinformatik,Forskargrupper vid Lunds universitet,Molecular Cell Biology,Department of Biology,Faculty of Science,Bioinformatics,Lund University Research Groups,Weill Cornell Medicine4 aut0 (Swepub:lu)er2374el
700	1	a Ahsanuddin, Sofiau Icahn School of Medicine at Mount Sinai4 aut
700	1	a Bhattacharya, Chandrima4 aut
700	1	a Butler, Daniel J.u Weill Cornell Medicine Feil Family Brain & Mind Research Institute4 aut
700	1	a Chng, Kern Reiu A*Star, Genome Institute of Singapore (GIS)4 aut
700	1	a Donnellan, Daisyu Weill Cornell Medicine4 aut
700	1	a Hecht, Jochenu Barcelona Institute of Science and Technology4 aut
700	1	a Jackson, Katelynu Weill Cornell Medicine4 aut
700	1	a Kuchin, Katerinau Weill Cornell Medicine4 aut
700	1	a Karasikov, Mikhailu Children's University Hospital, Zurich4 aut
700	1	a Lyons, Abigailu Weill Cornell Medicine4 aut
700	1	a Mak, Laurenu Weill Cornell Medicine4 aut
700	1	a Meleshko, Dmitryu Weill Cornell Medicine4 aut
700	1	a Mustafa, Harunu Children's University Hospital, Zurich4 aut
700	1	a Mutai, Bethu Kenya Medical Research Institute - Kisumu4 aut
700	1	a Neches, Russell Y.u Joint Genome Institute (JGI)4 aut
700	1	a Ng, Amandau A*Star, Genome Institute of Singapore (GIS)4 aut
700	1	a Nikolayeva, Olgau Independent Researcher4 aut
700	1	a Nikolayeva, Tatyanau Independent Researcher4 aut
700	1	a Png, Eileenu A*Star, Genome Institute of Singapore (GIS)4 aut
700	1	a Ryon, Krista A.u Weill Cornell Medicine4 aut
700	1	a Sanchez, Jorge L.u Weill Cornell Medicine4 aut
700	1	a Shaaban, Hebau Weill Cornell Medicine4 aut
700	1	a Sierra, Maria A.u Weill Cornell Medicine4 aut
700	1	a Thomas, Dominiqueu Weill Cornell Medicine4 aut
700	1	a Young, Benu Weill Cornell Medicine4 aut
700	1	a Abudayyeh, Omar O.u Massachusetts Institute of Technology4 aut
700	1	a Alicea, Josueu Weill Cornell Medicine4 aut
700	1	a Bhattacharyya, Malayu Indian Statistical Institute, Kolkata4 aut
700	1	a Blekhman, Ranu University of Minnesota4 aut
700	1	a Castro-Nallar, Eduardou Andrés Bello National University4 aut
700	1	a Cañas, Ana M.u Weill Cornell Medicine4 aut
700	1	a Chatziefthimiou, Aspassia D.4 aut
700	1	a Crawford, Robert W.u California State University4 aut
700	1	a De Filippis, Francescau University of Naples Federico II4 aut
700	1	a Deng, Youpingu University of Hawai'i at Hilo4 aut
700	1	a Desnues, Christelleu Mediterranean Institute of Oceanography, Marseille4 aut
700	1	a Dias-Neto, Emmanuelu A. C. Camargo Cancer Center4 aut
700	1	a Dybwad, Mariusu Norwegian Defence Research Establishment4 aut
700	1	a Elhaik, Eran4 aut
700	1	a Ercolini, Danilou University of Naples Federico II4 aut
700	1	a Frolova, Alinau Kyiv Academic University4 aut
700	1	a Gankin, Dennisu Massachusetts Institute of Technology4 aut
700	1	a Gootenberg, Jonathan S.u Massachusetts Institute of Technology4 aut
700	1	a Graf, Alexandra B.u University of Vienna4 aut
700	1	a Green, David C.u King's College London4 aut
700	1	a Hajirasouliha, Imanu Weill Cornell Medicine4 aut
700	1	a Hastings, Jaden J. A.4 aut
700	1	a Hernandez, Mark4 aut
700	1	a Iraola, Gregorio4 aut
700	1	a Jang, Soojin4 aut
700	1	a Kahles, Andre4 aut
700	1	a Kelly, Frank J.4 aut
700	1	a Knights, Kaymisha4 aut
700	1	a Kyrpides, Nikos C.4 aut
700	1	a Łabaj, Paweł P.4 aut
700	1	a Lee, Patrick K. H.4 aut
700	1	a Leung, Marcus H. Y.4 aut
700	1	a Ljungdahl, Per O.u Stockholms universitet,Institutionen för molekylär biovetenskap, Wenner-Grens institut4 aut0 (Swepub:su)pelju
700	1	a Mason-Buck, Gabriella4 aut
700	1	a McGrath, Ken4 aut
700	1	a Meydan, Cem4 aut
700	1	a Mongodin, Emmanuel F.4 aut
700	1	a Moraes, Milton Ozorio4 aut
700	1	a Nagarajan, Niranjan4 aut
700	1	a Nieto-Caballero, Marina4 aut
700	1	a Noushmehr, Houtan4 aut
700	1	a Oliveira, Manuela4 aut
700	1	a Ossowski, Stephan4 aut
700	1	a Osuolale, Olayinka O.4 aut
700	1	a Özcan, Orhan4 aut
700	1	a Paez-Espino, David4 aut
700	1	a Rascovan, Nicolás4 aut
700	1	a Richard, Hugues4 aut
700	1	a Rätsch, Gunnar4 aut
700	1	a Schriml, Lynn M.4 aut
700	1	a Semmler, Torsten4 aut
700	1	a Sezerman, Osman U.4 aut
700	1	a Shi, Leming4 aut
700	1	a Shi, Tieliu4 aut
700	1	a Siam, Rania4 aut
700	1	a Song, Le Huu4 aut
700	1	a Suzuki, Haruo4 aut
700	1	a Court, Denise Syndercombe4 aut
700	1	a Tighe, Scott W.4 aut
700	1	a Tong, Xinzhao4 aut
700	1	a Udekwu, Klasu Sveriges lantbruksuniversitet,Stockholms universitet,Institutionen för molekylär biovetenskap, Wenner-Grens institut,Swedish University of Agricultural Sciences, Sweden,Institutionen för vatten och miljö,Department of Aquatic Sciences and Assessment,Stockholm University4 aut0 (Swepub:su)kudek
700	1	a Ugalde, Juan A.4 aut
700	1	a Valentine, Brandon4 aut
700	1	a Vassilev, Dimitar4 aut
700	1	a Vayndorf, Elena M.4 aut
700	1	a Velavan, Thirumalaisamy P.4 aut
700	1	a Wu, Junu East China Normal University4 aut
700	1	a Zambrano, Maria M.4 aut
700	1	a Zhu, Jifeng4 aut
700	1	a Zhu, Sibo4 aut
700	1	a Mason, Christopher E.4 aut
710	2	a Weill Cornell Medicineb University Hospital of Tubingen4 org
710	2	a Sveriges lantbruksuniversitet
773	0	t Celld : Elsevier BVg 184:13, s. 3376-3393q 184:13<3376-3393x 0092-8674x 1097-4172
856	4	u https://doi.org/10.1016/j.cell.2021.05.002y Fulltext
856	4	u http://www.cell.com/article/S0092867421005857/pdf
856	4	u http://dx.doi.org/10.1016/j.cell.2021.05.002x freey FULLTEXT
856	4	u https://pub.epsilon.slu.se/id/eprint/25006/contentsx primaryx Raw objectx freey FULLTEXT
856	4 8	u https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-196175
856	4 8	u https://doi.org/10.1016/j.cell.2021.05.002
856	4 8	u http://kipublications.ki.se/Default.aspx?queryparsed=id:147016894
856	4 8	u https://lup.lub.lu.se/record/7304c899-1454-4879-92fc-774e334c8248
856	4 8	u https://res.slu.se/id/publ/113028

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Av författaren/redakt...: Danko, David; Bezdan, Daniela; Elhaik, Eran; Ahsanuddin, Sofi ...; Bhattacharya, Ch ...; Butler, Daniel J ...; visa fler...; Chng, Kern Rei; Donnellan, Daisy; Hecht, Jochen; Jackson, Katelyn; Kuchin, Katerina; Karasikov, Mikha ...; Lyons, Abigail; Mak, Lauren; Meleshko, Dmitry; Mustafa, Harun; Mutai, Beth; Neches, Russell ...; Ng, Amanda; Nikolayeva, Olga; Nikolayeva, Taty ...; Png, Eileen; Ryon, Krista A.; Sanchez, Jorge L ...; Shaaban, Heba; Sierra, Maria A.; Thomas, Dominiqu ...; Young, Ben; Abudayyeh, Omar ...; Alicea, Josue; Bhattacharyya, M ...; Blekhman, Ran; Castro-Nallar, E ...; Cañas, Ana M.; Chatziefthimiou, ...; Crawford, Robert ...; De Filippis, Fra ...; Deng, Youping; Desnues, Christe ...; Dias-Neto, Emman ...; Dybwad, Marius; Ercolini, Danilo; Frolova, Alina; Gankin, Dennis; Gootenberg, Jona ...; Graf, Alexandra ...; Green, David C.; Hajirasouliha, I ...; Hastings, Jaden ...; Hernandez, Mark; Iraola, Gregorio; Jang, Soojin; Kahles, Andre; Kelly, Frank J.; Knights, Kaymish ...; Kyrpides, Nikos ...; Łabaj, Paweł P.; Lee, Patrick K. ...; Leung, Marcus H. ...; Ljungdahl, Per O ...; Mason-Buck, Gabr ...; McGrath, Ken; Meydan, Cem; Mongodin, Emmanu ...; Moraes, Milton O ...; Nagarajan, Niran ...; Nieto-Caballero, ...; Noushmehr, Houta ...; Oliveira, Manuel ...; Ossowski, Stepha ...; Osuolale, Olayin ...; Özcan, Orhan; Paez-Espino, Dav ...; Rascovan, Nicolá ...; Richard, Hugues; Rätsch, Gunnar; Schriml, Lynn M.; Semmler, Torsten; Sezerman, Osman ...; Shi, Leming; Shi, Tieliu; Siam, Rania; Song, Le Huu; Suzuki, Haruo; Court, Denise Sy ...; Tighe, Scott W.; Tong, Xinzhao; Udekwu, Klas; Ugalde, Juan A.; Valentine, Brand ...; Vassilev, Dimita ...; Vayndorf, Elena ...; Velavan, Thiruma ...; Wu, Jun; Zambrano, Maria ...; Zhu, Jifeng; Zhu, Sibo; Mason, Christoph ...; visa färre...

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