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  • Groenen, M. A. (author)

Analyses of pig genomes provide insight into porcine demography and evolution

  • Article/chapterEnglish2012

Publisher, publication year, extent ...

  • 2012-11-14
  • Springer Science and Business Media LLC,2012
  • printrdacarrier

Numbers

  • LIBRIS-ID:oai:DiVA.org:uu-185085
  • https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-185085URI
  • https://doi.org/10.1038/nature11622DOI

Supplementary language notes

  • Language:English
  • Summary in:English

Part of subdatabase

Classification

  • Subject category:ref swepub-contenttype
  • Subject category:art swepub-publicationtype

Notes

  • For 10,000 years pigs and humans have shared a close and complex relationship. From domestication to modern breeding practices, humans have shaped the genomes of domestic pigs. Here we present the assembly and analysis of the genome sequence of a female domestic Duroc pig (Sus scrofa) and a comparison with the genomes of wild and domestic pigs from Europe and Asia. Wild pigs emerged in South East Asia and subsequently spread across Eurasia. Our results reveal a deep phylogenetic split between European and Asian wild boars approximately 1 million years ago, and a selective sweep analysis indicates selection on genes involved in RNA processing and regulation. Genes associated with immune response and olfaction exhibit fast evolution. Pigs have the largest repertoire of functional olfactory receptor genes, reflecting the importance of smell in this scavenging animal. The pig genome sequence provides an important resource for further improvements of this important livestock species, and our identification of many putative disease-causing variants extends the potential of the pig as a biomedical model.

Subject headings and genre

Added entries (persons, corporate bodies, meetings, titles ...)

  • Archibald, A. L. (author)
  • Uenishi, H. (author)
  • Tuggle, C. K. (author)
  • Takeuchi, Y. (author)
  • Rothschild, M. F. (author)
  • Rogel-Gaillard, C. (author)
  • Park, C. (author)
  • Milan, D. (author)
  • Megens, H. J. (author)
  • Li, S. (author)
  • Larkin, D. M. (author)
  • Kim, H. (author)
  • Frantz, L. A. (author)
  • Caccamo, M. (author)
  • Ahn, H. (author)
  • Aken, B. L. (author)
  • Anselmo, A. (author)
  • Anthon, C. (author)
  • Auvil, L. (author)
  • Badaoui, B. (author)
  • Beattie, C. W. (author)
  • Bendixen, C. (author)
  • Berman, D. (author)
  • Blecha, F. (author)
  • Blomberg, JonasUppsala universitet,Klinisk virologi(Swepub:uu)jonablom (author)
  • Bolund, L. (author)
  • Bosse, M. (author)
  • Botti, S. (author)
  • Bujie, Z. (author)
  • Byström, M. (author)
  • Capitanu, B. (author)
  • Carvalho-Silva, D. (author)
  • Chardon, P. (author)
  • Chen, C. (author)
  • Cheng, R. (author)
  • Choi, S. H. (author)
  • Chow, W. (author)
  • Clark, R. C. (author)
  • Clee, C. (author)
  • Crooijmans, R. P. (author)
  • Dawson, H. D. (author)
  • Dehais, P. (author)
  • De Sapio, F. (author)
  • Dibbits, B. (author)
  • Drou, N. (author)
  • Du, Z. Q. (author)
  • Eversole, K. (author)
  • Fadista, J. (author)
  • Fairley, S. (author)
  • Faraut, T. (author)
  • Faulkner, G. J. (author)
  • Fowler, K. E. (author)
  • Fredholm, M. (author)
  • Fritz, E. (author)
  • Gilbert, J. G. (author)
  • Giuffra, E. (author)
  • Gorodkin, J. (author)
  • Griffin, D. K. (author)
  • Harrow, J. L. (author)
  • Hayward, AlexanderUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)aleha347 (author)
  • Howe, K. (author)
  • Hu, Z. L. (author)
  • Humphray, S. J. (author)
  • Hunt, T. (author)
  • Hornshoj, H. (author)
  • Jeon, J. T. (author)
  • Jern, PatricUppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab(Swepub:uu)patrjern (author)
  • Jones, M. (author)
  • Jurka, J. (author)
  • Kanamori, H. (author)
  • Kapetanovic, R. (author)
  • Kim, J. (author)
  • Kim, J. H. (author)
  • Kim, K. W. (author)
  • Kim, T. H. (author)
  • Larson, G. (author)
  • Lee, K. (author)
  • Lee, K. T. (author)
  • Leggett, R. (author)
  • Lewin, H. A. (author)
  • Li, Y. (author)
  • Liu, W. (author)
  • Loveland, J. E. (author)
  • Lu, Y. (author)
  • Lunney, J. K. (author)
  • Ma, J. (author)
  • Madsen, O. (author)
  • Mann, K. (author)
  • Matthews, L. (author)
  • McLaren, S. (author)
  • Morozumi, T. (author)
  • Murtaugh, M. P. (author)
  • Narayan, J. (author)
  • Nguyen, D. T. (author)
  • Ni, P. (author)
  • Oh, S. J. (author)
  • Onteru, S. (author)
  • Panitz, F. (author)
  • Park, E. W. (author)
  • Park, H. S. (author)
  • Pascal, G. (author)
  • Paudel, Y. (author)
  • Perez-Enciso, M. (author)
  • Ramirez-Gonzalez, R. (author)
  • Reecy, J. M. (author)
  • Rodriguez-Zas, S. (author)
  • Rohrer, G. A. (author)
  • Rund, L. (author)
  • Sang, Y. (author)
  • Schachtschneider, K. (author)
  • Schraiber, J. G. (author)
  • Schwartz, J. (author)
  • Scobie, L. (author)
  • Scott, C. (author)
  • Searle, S. (author)
  • Servin, B. (author)
  • Southey, B. R. (author)
  • Sperber, GöranUppsala universitet,Fysiologi(Swepub:uu)gsp26613 (author)
  • Stadler, P. (author)
  • Sweedler, J. V. (author)
  • Tafer, H. (author)
  • Thomsen, B. (author)
  • Wali, R. (author)
  • Wang, J. (author)
  • White, S. (author)
  • Xu, X. (author)
  • Yerle, M. (author)
  • Zhang, G. (author)
  • Zhang, J. (author)
  • Zhao, S. (author)
  • Rogers, J. (author)
  • Churcher, C. (author)
  • Schook, L. B. (author)
  • Uppsala universitetKlinisk virologi (creator_code:org_t)

Related titles

  • In:Nature: Springer Science and Business Media LLC491:7424, s. 393-3980028-08361476-4687

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By the author/editor
Groenen, M. A.
Archibald, A. L.
Uenishi, H.
Tuggle, C. K.
Takeuchi, Y.
Rothschild, M. F ...
show more...
Rogel-Gaillard, ...
Park, C.
Milan, D.
Megens, H. J.
Li, S.
Larkin, D. M.
Kim, H.
Frantz, L. A.
Caccamo, M.
Ahn, H.
Aken, B. L.
Anselmo, A.
Anthon, C.
Auvil, L.
Badaoui, B.
Beattie, C. W.
Bendixen, C.
Berman, D.
Blecha, F.
Blomberg, Jonas
Bolund, L.
Bosse, M.
Botti, S.
Bujie, Z.
Byström, M.
Capitanu, B.
Carvalho-Silva, ...
Chardon, P.
Chen, C.
Cheng, R.
Choi, S. H.
Chow, W.
Clark, R. C.
Clee, C.
Crooijmans, R. P ...
Dawson, H. D.
Dehais, P.
De Sapio, F.
Dibbits, B.
Drou, N.
Du, Z. Q.
Eversole, K.
Fadista, J.
Fairley, S.
Faraut, T.
Faulkner, G. J.
Fowler, K. E.
Fredholm, M.
Fritz, E.
Gilbert, J. G.
Giuffra, E.
Gorodkin, J.
Griffin, D. K.
Harrow, J. L.
Hayward, Alexand ...
Howe, K.
Hu, Z. L.
Humphray, S. J.
Hunt, T.
Hornshoj, H.
Jeon, J. T.
Jern, Patric
Jones, M.
Jurka, J.
Kanamori, H.
Kapetanovic, R.
Kim, J.
Kim, J. H.
Kim, K. W.
Kim, T. H.
Larson, G.
Lee, K.
Lee, K. T.
Leggett, R.
Lewin, H. A.
Li, Y.
Liu, W.
Loveland, J. E.
Lu, Y.
Lunney, J. K.
Ma, J.
Madsen, O.
Mann, K.
Matthews, L.
McLaren, S.
Morozumi, T.
Murtaugh, M. P.
Narayan, J.
Nguyen, D. T.
Ni, P.
Oh, S. J.
Onteru, S.
Panitz, F.
Park, E. W.
Park, H. S.
Pascal, G.
Paudel, Y.
Perez-Enciso, M.
Ramirez-Gonzalez ...
Reecy, J. M.
Rodriguez-Zas, S ...
Rohrer, G. A.
Rund, L.
Sang, Y.
Schachtschneider ...
Schraiber, J. G.
Schwartz, J.
Scobie, L.
Scott, C.
Searle, S.
Servin, B.
Southey, B. R.
Sperber, Göran
Stadler, P.
Sweedler, J. V.
Tafer, H.
Thomsen, B.
Wali, R.
Wang, J.
White, S.
Xu, X.
Yerle, M.
Zhang, G.
Zhang, J.
Zhao, S.
Rogers, J.
Churcher, C.
Schook, L. B.
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About the subject
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
and Genetics
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
and Evolutionary Bio ...
AGRICULTURAL SCIENCES
AGRICULTURAL SCI ...
and Animal and Dairy ...
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Nature
By the university
Uppsala University

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Groenen, M. A.
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