Sökning: WFRF:(Levander E) > The HUPO proteomics...
Fältnamn | Indikatorer | Metadata |
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000 | 03721naa a2200481 4500 | |
001 | oai:lup.lub.lu.se:763d9716-047a-4bff-a09d-c6a288dd0949 | |
003 | SwePub | |
008 | 160401s2013 | |||||||||||000 ||eng| | |
024 | 7 | a https://lup.lub.lu.se/record/36364912 URI |
024 | 7 | a https://doi.org/10.1093/database/bat0092 DOI |
040 | a (SwePub)lu | |
041 | a engb eng | |
042 | 9 SwePub | |
072 | 7 | a art2 swepub-publicationtype |
072 | 7 | a ref2 swepub-contenttype |
100 | 1 | a Mayer, Gerhard4 aut |
245 | 1 0 | a The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary |
264 | c 2013-03-12 | |
264 | 1 | b Oxford University Press (OUP),c 2013 |
520 | a Controlled vocabularies (CVs), i.e. a collection of predefined terms describing a modeling domain, used for the semantic annotation of data, and ontologies are used in structured data formats and databases to avoid inconsistencies in annotation, to have a unique (and preferably short) accession number and to give researchers and computer algorithms the possibility for more expressive semantic annotation of data. The Human Proteome Organization (HUPO)-Proteomics Standards Initiative (PSI) makes extensive use of ontologies/CVs in their data formats. The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance. Owing to the range of topics covered by the CV, collaborative development across several PSI working groups, including proteomics research groups, instrument manufacturers and software vendors, was necessary. In this article, we describe the overall structure of the CV, the process by which it has been developed and is maintained and the dependencies on other ontologies. | |
650 | 7 | a MEDICIN OCH HÄLSOVETENSKAPx Medicinska och farmaceutiska grundvetenskaperx Immunologi inom det medicinska området0 (SwePub)301102 hsv//swe |
650 | 7 | a MEDICAL AND HEALTH SCIENCESx Basic Medicinex Immunology in the medical area0 (SwePub)301102 hsv//eng |
700 | 1 | a Montecchi-Palazzi, Luisa4 aut |
700 | 1 | a Ovelleiro, David4 aut |
700 | 1 | a Jones, Andrew R.4 aut |
700 | 1 | a Binz, Pierre-Alain4 aut |
700 | 1 | a Deutsch, Eric W.4 aut |
700 | 1 | a Chambers, Matthew4 aut |
700 | 1 | a Kallhardt, Marius4 aut |
700 | 1 | a Levander, Fredriku Lund University,Lunds universitet,Institutionen för immunteknologi,Institutioner vid LTH,Lunds Tekniska Högskola,Department of Immunotechnology,Departments at LTH,Faculty of Engineering, LTH4 aut0 (Swepub:lu)tmb-fle |
700 | 1 | a Shofstahl, James4 aut |
700 | 1 | a Orchard, Sandra4 aut |
700 | 1 | a Vizcaino, Juan Antonio4 aut |
700 | 1 | a Hermjakob, Henning4 aut |
700 | 1 | a Stephan, Christian4 aut |
700 | 1 | a Meyer, Helmut E.4 aut |
700 | 1 | a Eisenacher, Martin4 aut |
710 | 2 | a Institutionen för immunteknologib Institutioner vid LTH4 org |
773 | 0 | t Database: the journal of biological databases and curationd : Oxford University Press (OUP)g , s. 009-009q <009-009x 1758-0463 |
856 | 4 | u http://dx.doi.org/10.1093/database/bat009x freey FULLTEXT |
856 | 4 | u https://doi.org/10.1093/database/bat009 |
856 | 4 8 | u https://lup.lub.lu.se/record/3636491 |
856 | 4 8 | u https://doi.org/10.1093/database/bat009 |
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