WFRF:(Lucas P. C.)
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- Tuskan, G A (author)
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
- Article/chapterEnglish2006
Publisher, publication year, extent ...
- American Association for the Advancement of Science (AAAS),2006
- printrdacarrier
Numbers
- LIBRIS-ID:oai:DiVA.org:umu-14206
- https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-14206URI
- https://doi.org/10.1126/science.1128691DOI
- https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-15989URI
Supplementary language notes
- Language:English
- Summary in:English
Part of subdatabase
- SwePubSwePub
Classification
Notes
- QC 20100525
- We report the draft genome of the black cottonwood tree, Populus trichocarpa. Integration of shotgun sequence assembly with genetic mapping enabled chromosome-scale reconstruction of the genome. More than 45,000 putative protein-coding genes were identified. Analysis of the assembled genome revealed a whole-genome duplication event; about 8000 pairs of duplicated genes from that event survived in the Populus genome. A second, older duplication event is indistinguishably coincident with the divergence of the Populus and Arabidopsis lineages. Nucleotide substitution, tandem gene duplication, and gross chromosomal rearrangement appear to proceed substantially more slowly in Populus than in Arabidopsis. Populus has more protein-coding genes than Arabidopsis, ranging on average from 1.4 to 1.6 putative Populus homologs for each Arabidopsis gene. However, the relative frequency of protein domains in the two genomes is similar. Overrepresented exceptions in Populus include genes associated with lignocellulosic wall biosynthesis, meristem development, disease resistance, and metabolite transport.
Subject headings and genre
- Arabidopsis/genetics
- Chromosome Mapping
- Computational Biology
- Evolution; Molecular
- Expressed Sequence Tags
- Gene Duplication
- Gene Expression
- Genes; Plant
- Genome; Plant
- Oligonucleotide Array Sequence Analysis
- Phylogeny
- Plant Proteins/chemistry/genetics
- Polymorphism; Single Nucleotide
- Populus/*genetics/growth & development/metabolism
- Protein Structure; Tertiary
- RNA; Plant/analysis
- RNA; Untranslated/analysis
- Sequence Analysis; DNA
Added entries (persons, corporate bodies, meetings, titles ...)
- Difazio, S (author)
- Jansson, StefanUmeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)(Swepub:umu)stja0001 (author)
- Bohlmann, J (author)
- Grigoriev, I (author)
- Hellsten, U (author)
- Putnam, N (author)
- Ralph, S (author)
- Rombauts, S (author)
- Salamov, A (author)
- Schein, J (author)
- Sterck, L (author)
- Aerts, A (author)
- Bhalerao, Rupali RUmeå universitet,Umeå Plant Science Centre (UPSC) (author)
- Bhalerao, Rishikesh PUmeå universitet,Umeå Plant Science Centre (UPSC) (author)
- Blaudez, D (author)
- Boerjan, W (author)
- Brun, A (author)
- Brunner, A (author)
- Busov, V (author)
- Campbell, M (author)
- Karlsson, JanUmeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)(Swepub:umu)jaka0002 (author)
- Chalot, M (author)
- Chapman, J (author)
- Chen, G-L (author)
- Cooper, D (author)
- Coutinho, P M (author)
- Couturier, J (author)
- Covert, S (author)
- Cronk, Q (author)
- Cunningham, R (author)
- Davis, J (author)
- Degroeve, S (author)
- Déjardin, A (author)
- Depamphilis, C (author)
- Detter, J (author)
- Dirks, B (author)
- Dubchak, I (author)
- Duplessis, S (author)
- Ehlting, J (author)
- Ellis, B (author)
- Gendler, K (author)
- Goodstein, D (author)
- Gribskov, M (author)
- Grimwood, J (author)
- Groover, A (author)
- Gunter, L (author)
- Hamberger, B (author)
- Heinze, B (author)
- Helariutta, Y (author)
- Henrissat, B (author)
- Holligan, D (author)
- Holt, R (author)
- Huang, W (author)
- Islam-Faridi, N (author)
- Jones, S (author)
- Jones-Rhoades, M (author)
- Jorgensen, R (author)
- Joshi, C (author)
- Kangasjärvi, J (author)
- Karlsson, JanUmeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)(Swepub:umu)jaka0002 (author)
- Kelleher, C (author)
- Kirkpatrick, R (author)
- Kirst, M (author)
- Kohler, A (author)
- Kalluri, U (author)
- Larimer, F (author)
- Leebens-Mack, J (author)
- Leplé, J-C (author)
- Locascio, P (author)
- Lou, Y (author)
- Lucas, S (author)
- Martin, F (author)
- Montanini, B (author)
- Napoli, C (author)
- Nelson, D R (author)
- Nelson, C (author)
- Nieminen, K (author)
- Nilsson, OveUmeå universitet,Umeå Plant Science Centre (UPSC) (author)
- Pereda, V (author)
- Peter, G (author)
- Philippe, R (author)
- Pilate, G (author)
- Poliakov, A (author)
- Razumovskaya, J (author)
- Richardson, P (author)
- Rinaldi, C (author)
- Ritland, K (author)
- Rouzé, P (author)
- Ryaboy, D (author)
- Schmutz, J (author)
- Schrader, J (author)
- Segerman, Bo (author)
- Shin, H (author)
- Siddiqui, A (author)
- Sterky, FredrikKTH,Proteomik(Swepub:kth)u1xdtphk (author)
- Terry, A (author)
- Tsai, C-J (author)
- Uberbacher, E (author)
- Unneberg, P (author)
- Vahala, J (author)
- Wall, K (author)
- Wessler, S (author)
- Yang, G (author)
- Yin, T (author)
- Douglas, C (author)
- Marra, M (author)
- Sandberg, GöranUmeå universitet,Umeå Plant Science Centre (UPSC)(Swepub:umu)gosa0003 (author)
- Van de Peer, Y (author)
- Rokhsar, D (author)
- Umeå universitetInstitutionen för fysiologisk botanik (creator_code:org_t)
Related titles
- In:Science: American Association for the Advancement of Science (AAAS)313:5793, s. 1596-6041095-92030036-8075
Internet link
- http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=16973872&dopt=Citation
- https://digital.library.unt.edu/ark:/67531/metadc883930/m2/1/high_res_d/901819.pdf
- https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-14206
- https://doi.org/10.1126/science.1128691
- https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-15989
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- Tuskan, G A
- Difazio, S
- Jansson, Stefan
- Bohlmann, J
- Grigoriev, I
- Hellsten, U
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- Putnam, N
- Ralph, S
- Rombauts, S
- Salamov, A
- Schein, J
- Sterck, L
- Aerts, A
- Bhalerao, Rupali ...
- Bhalerao, Rishik ...
- Blaudez, D
- Boerjan, W
- Brun, A
- Brunner, A
- Busov, V
- Campbell, M
- Karlsson, Jan
- Chalot, M
- Chapman, J
- Chen, G-L
- Cooper, D
- Coutinho, P M
- Couturier, J
- Covert, S
- Cronk, Q
- Cunningham, R
- Davis, J
- Degroeve, S
- Déjardin, A
- Depamphilis, C
- Detter, J
- Dirks, B
- Dubchak, I
- Duplessis, S
- Ehlting, J
- Ellis, B
- Gendler, K
- Goodstein, D
- Gribskov, M
- Grimwood, J
- Groover, A
- Gunter, L
- Hamberger, B
- Heinze, B
- Helariutta, Y
- Henrissat, B
- Holligan, D
- Holt, R
- Huang, W
- Islam-Faridi, N
- Jones, S
- Jones-Rhoades, M
- Jorgensen, R
- Joshi, C
- Kangasjärvi, J
- Kelleher, C
- Kirkpatrick, R
- Kirst, M
- Kohler, A
- Kalluri, U
- Larimer, F
- Leebens-Mack, J
- Leplé, J-C
- Locascio, P
- Lou, Y
- Lucas, S
- Martin, F
- Montanini, B
- Napoli, C
- Nelson, D R
- Nelson, C
- Nieminen, K
- Nilsson, Ove
- Pereda, V
- Peter, G
- Philippe, R
- Pilate, G
- Poliakov, A
- Razumovskaya, J
- Richardson, P
- Rinaldi, C
- Ritland, K
- Rouzé, P
- Ryaboy, D
- Schmutz, J
- Schrader, J
- Segerman, Bo
- Shin, H
- Siddiqui, A
- Sterky, Fredrik
- Terry, A
- Tsai, C-J
- Uberbacher, E
- Unneberg, P
- Vahala, J
- Wall, K
- Wessler, S
- Yang, G
- Yin, T
- Douglas, C
- Marra, M
- Sandberg, Göran
- Van de Peer, Y
- Rokhsar, D
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