Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

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Fältnamn	Indikatorer	Metadata
000		07048naa a2201525 4500
001		oai:DiVA.org:uu-148288
003		SwePub
008		110304s2009 \| \|\|\|\|\|\|\|\|\|\|\|000 \|\|eng\|
009		oai:DiVA.org:kth-18764
024	7	a https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-1482882 URI
024	7	a https://doi.org/10.1038/nature083582 DOI
024	7	a https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-187642 URI
040		a (SwePub)uud (SwePub)kth
041		a engb eng
042		9 SwePub
072	7	a ref2 swepub-contenttype
072	7	a art2 swepub-publicationtype
100	1	a Haas, Brian J.4 aut
245	1 0	a Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
264		c 2009-09-09
264	1	b Springer Science and Business Media LLC,c 2009
338		a print2 rdacarrier
500		a QC 20100525
520		a Phytophthora infestans is the most destructive pathogen of potato and a model organism for the oomycetes, a distinct lineage of fungus-like eukaryotes that are related to organisms such as brown algae and diatoms. As the agent of the Irish potato famine in the mid-nineteenth century, P. infestans has had a tremendous effect on human history, resulting in famine and population displacement(1). To this day, it affects world agriculture by causing the most destructive disease of potato, the fourth largest food crop and a critical alternative to the major cereal crops for feeding the world's population(1). Current annual worldwide potato crop losses due to late blight are conservatively estimated at $6.7 billion(2). Management of this devastating pathogen is challenged by its remarkable speed of adaptation to control strategies such as genetically resistant cultivars(3,4). Here we report the sequence of the P. infestans genome, which at similar to 240 megabases (Mb) is by far the largest and most complex genome sequenced so far in the chromalveolates. Its expansion results from a proliferation of repetitive DNA accounting for similar to 74% of the genome. Comparison with two other Phytophthora genomes showed rapid turnover and extensive expansion of specific families of secreted disease effector proteins, including many genes that are induced during infection or are predicted to have activities that alter host physiology. These fast-evolving effector genes are localized to highly dynamic and expanded regions of the P. infestans genome. This probably plays a crucial part in the rapid adaptability of the pathogen to host plants and underpins its evolutionary potential.
650	7	a NATURVETENSKAPx Biologi0 (SwePub)1062 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciences0 (SwePub)1062 hsv//eng
653		a Biology
653		a Biologi
653		a effector proteins
700	1	a Kamoun, Sophien4 aut
700	1	a Zody, Michael C.u Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi4 aut0 (Swepub:uu)miczo266
700	1	a Jiang, Rays H. Y.4 aut
700	1	a Handsaker, Robert E.4 aut
700	1	a Cano, Liliana M.4 aut
700	1	a Grabherr, Manfred4 aut
700	1	a Kodira, Chinnappa D.4 aut
700	1	a Raffaele, Sylvain4 aut
700	1	a Torto-Alalibo, Trudy4 aut
700	1	a Bozkurt, Tolga O.4 aut
700	1	a Ah-Fong, Audrey M. V.4 aut
700	1	a Alvarado, Lucia4 aut
700	1	a Anderson, Vicky L.4 aut
700	1	a Armstrong, Miles R.4 aut
700	1	a Avrova, Anna4 aut
700	1	a Baxter, Laura4 aut
700	1	a Beynon, Jim4 aut
700	1	a Boevink, Petra C.4 aut
700	1	a Bollmann, Stephanie R.4 aut
700	1	a Bos, Jorunn I. B.4 aut
700	1	a Bulone, Vincentu KTH,Glykovetenskap4 aut0 (Swepub:kth)u13o1auq
700	1	a Cai, Guohong4 aut
700	1	a Cakir, Cahid4 aut
700	1	a Carrington, James C.4 aut
700	1	a Chawner, Megan4 aut
700	1	a Conti, Lucio4 aut
700	1	a Costanzo, Stefano4 aut
700	1	a Ewan, Richard4 aut
700	1	a Fahlgren, Noah4 aut
700	1	a Fischbach, Michael A.4 aut
700	1	a Fugelstad, Johannau KTH,Glykovetenskap4 aut0 (Swepub:kth)u19ifqej
700	1	a Gilroy, Eleanor M.4 aut
700	1	a Gnerre, Sante4 aut
700	1	a Green, Pamela J.4 aut
700	1	a Grenville-Briggs, Laura J.4 aut
700	1	a Griffith, John4 aut
700	1	a Gruenwald, Niklaus J.4 aut
700	1	a Horn, Karolyn4 aut
700	1	a Horner, Neil R.4 aut
700	1	a Hu, Chia-Hui4 aut
700	1	a Huitema, Edgar4 aut
700	1	a Jeong, Dong-Hoon4 aut
700	1	a Jones, Alexandra M. E.4 aut
700	1	a Jones, Jonathan D. G.4 aut
700	1	a Jones, Richard W.4 aut
700	1	a Karlsson, Elinor K.4 aut
700	1	a Kunjeti, Sridhara G.4 aut
700	1	a Lamour, Kurt4 aut
700	1	a Liu, Zhenyu4 aut
700	1	a Ma, LiJun4 aut
700	1	a MacLean, Daniel4 aut
700	1	a Chibucos, Marcus C.4 aut
700	1	a McDonald, Hayes4 aut
700	1	a McWalters, Jessica4 aut
700	1	a Meijer, Harold J. G.4 aut
700	1	a Morgan, William4 aut
700	1	a Morris, Paul F.4 aut
700	1	a Munro, Carol A.4 aut
700	1	a O'Neill, Keith4 aut
700	1	a Ospina-Giraldo, Manuel4 aut
700	1	a Pinzon, Andres4 aut
700	1	a Pritchard, Leighton4 aut
700	1	a Ramsahoye, Bernard4 aut
700	1	a Ren, Qinghu4 aut
700	1	a Restrepo, Silvia4 aut
700	1	a Roy, Sourav4 aut
700	1	a Sadanandom, Ari4 aut
700	1	a Savidor, Alon4 aut
700	1	a Schornack, Sebastian4 aut
700	1	a Schwartz, David C.4 aut
700	1	a Schumann, Ulrike D.4 aut
700	1	a Schwessinger, Ben4 aut
700	1	a Seyer, Lauren4 aut
700	1	a Sharpe, Ted4 aut
700	1	a Silvar, Cristina4 aut
700	1	a Song, Jing4 aut
700	1	a Studholme, David J.4 aut
700	1	a Sykes, Sean4 aut
700	1	a Thines, Marco4 aut
700	1	a van de Vondervoort, Peter J. I.4 aut
700	1	a Phuntumart, Vipaporn4 aut
700	1	a Wawra, Stephan4 aut
700	1	a Weide, Rob4 aut
700	1	a Win, Joe4 aut
700	1	a Young, Carolyn4 aut
700	1	a Zhou, Shiguo4 aut
700	1	a Fry, William4 aut
700	1	a Meyers, Blake C.4 aut
700	1	a van West, Pieter4 aut
700	1	a Ristaino, Jean4 aut
700	1	a Govers, Francine4 aut
700	1	a Birch, Paul R. J.4 aut
700	1	a Whisson, Stephen C.4 aut
700	1	a Judelson, Howard S.4 aut
700	1	a Nusbaum, Chad4 aut
710	2	a Uppsala universitetb Institutionen för medicinsk biokemi och mikrobiologi4 org
773	0	t Natured : Springer Science and Business Media LLCg 461:7262, s. 393-398q 461:7262<393-398x 0028-0836x 1476-4687
856	4	u https://www.nature.com/articles/nature08358.pdf
856	4 8	u https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-148288
856	4 8	u https://doi.org/10.1038/nature08358
856	4 8	u https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-18764

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Av författaren/redakt...: Haas, Brian J.; Kamoun, Sophien; Zody, Michael C.; Jiang, Rays H. Y ...; Handsaker, Rober ...; Cano, Liliana M.; visa fler...; Grabherr, Manfre ...; Kodira, Chinnapp ...; Raffaele, Sylvai ...; Torto-Alalibo, T ...; Bozkurt, Tolga O ...; Ah-Fong, Audrey ...; Alvarado, Lucia; Anderson, Vicky ...; Armstrong, Miles ...; Avrova, Anna; Baxter, Laura; Beynon, Jim; Boevink, Petra C ...; Bollmann, Stepha ...; Bos, Jorunn I. B ...; Bulone, Vincent; Cai, Guohong; Cakir, Cahid; Carrington, Jame ...; Chawner, Megan; Conti, Lucio; Costanzo, Stefan ...; Ewan, Richard; Fahlgren, Noah; Fischbach, Micha ...; Fugelstad, Johan ...; Gilroy, Eleanor ...; Gnerre, Sante; Green, Pamela J.; Grenville-Briggs ...; Griffith, John; Gruenwald, Nikla ...; Horn, Karolyn; Horner, Neil R.; Hu, Chia-Hui; Huitema, Edgar; Jeong, Dong-Hoon; Jones, Alexandra ...; Jones, Jonathan ...; Jones, Richard W ...; Karlsson, Elinor ...; Kunjeti, Sridhar ...; Lamour, Kurt; Liu, Zhenyu; Ma, LiJun; MacLean, Daniel; Chibucos, Marcus ...; McDonald, Hayes; McWalters, Jessi ...; Meijer, Harold J ...; Morgan, William; Morris, Paul F.; Munro, Carol A.; O'Neill, Keith; Ospina-Giraldo, ...; Pinzon, Andres; Pritchard, Leigh ...; Ramsahoye, Berna ...; Ren, Qinghu; Restrepo, Silvia; Roy, Sourav; Sadanandom, Ari; Savidor, Alon; Schornack, Sebas ...; Schwartz, David ...; Schumann, Ulrike ...; Schwessinger, Be ...; Seyer, Lauren; Sharpe, Ted; Silvar, Cristina; Song, Jing; Studholme, David ...; Sykes, Sean; Thines, Marco; van de Vondervoo ...; Phuntumart, Vipa ...; Wawra, Stephan; Weide, Rob; Win, Joe; Young, Carolyn; Zhou, Shiguo; Fry, William; Meyers, Blake C.; van West, Pieter; Ristaino, Jean; Govers, Francine; Birch, Paul R. J ...; Whisson, Stephen ...; Judelson, Howard ...; Nusbaum, Chad; visa färre...

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