Search: WFRF:(Suh Alexander) >
The swan genome and...
The swan genome and transcriptome, it is not all black and white
-
- Karawita, Anjana C. (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia.;Commonwealth Sci & Ind Res Org, Australian Ctr Dis Preparedness, 5 Portarlington Rd, Geelong 3220, Vic, Australia
-
- Cheng, Yuanyuan (author)
- Univ Sydney, Sch Life & Environm Sci, Sydney 2006, NSW, Australia
-
- Chew, Keng Yih (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
show more...
-
- Challagulla, Arjun (author)
- Commonwealth Sci & Ind Res Org, Australian Ctr Dis Preparedness, 5 Portarlington Rd, Geelong 3220, Vic, Australia
-
- Kraus, Robert (author)
- Max Planck Inst Anim Behav, Dept Migrat, ,, D-78315 Radolfzell am Bodensee, Germany.;Univ Konstanz, Dept Biol, D-78457 Constance, Germany
-
- Mueller, Ralf C. (author)
- Max Planck Inst Anim Behav, Dept Migrat, ,, D-78315 Radolfzell am Bodensee, Germany.;Univ Konstanz, Dept Biol, D-78457 Constance, Germany
-
- Tong, Marcus Z. W. (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
- Hulme, Katina D. (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
- Bielefeldt-Ohmann, Helle (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
- Steele, Lauren E. (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
- Wu, Melanie (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
- Sng, Julian (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
- Noye, Ellesandra (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
- Bruxner, Timothy J. (author)
- Univ Queensland, Inst Mol Biosci, St Lucia 4072, Qld, Australia
-
- Au, Gough G. (author)
- Commonwealth Sci & Ind Res Org, Australian Ctr Dis Preparedness, 5 Portarlington Rd, Geelong 3220, Vic, Australia
-
- Lowther, Suzanne (author)
- Commonwealth Sci & Ind Res Org, Australian Ctr Dis Preparedness, 5 Portarlington Rd, Geelong 3220, Vic, Australia
-
- Blommaert, Julie (author)
- Uppsala universitet,Systematisk biologi,New Zealand Inst Plant & Food Res Ltd, Nelson 7010, New Zealand
-
- Suh, Alexander (author)
- Uppsala universitet,Evolutionsbiologi,Science for Life Laboratory, SciLifeLab,Systematisk biologi,Univ East Anglia, Sch Biol Sci, Norwich Res Pk, Norwich NR4 7TU, Norfolk, England
-
- McCauley, Alexander J. (author)
- Commonwealth Sci & Ind Res Org, Australian Ctr Dis Preparedness, 5 Portarlington Rd, Geelong 3220, Vic, Australia
-
- Kaur, Parwinder (author)
- Univ Western Australia, Sch Agr & Environm, Perth, WA 6009, Australia
-
- Dudchenko, Olga (author)
- Baylor Coll Med, Ctr Genome Architecture, Dept Mol & Human Genet, Houston, TX 77030 USA.;Rice Univ, Ctr Theoret Biol Phys, Dept Comp Sci, Houston, TX 77030 USA
-
- Aiden, Erez (author)
- Univ Western Australia, Australia;Baylor Coll Med, USA;Rice Univ, USA;Broad Institute of MIT and Harvard, USA;ShanghaiTech, China,Univ Western Australia, Sch Agr & Environm, Perth, WA 6009, Australia.;Baylor Coll Med, Ctr Genome Architecture, Dept Mol & Human Genet, Houston, TX 77030 USA.;Rice Univ, Ctr Theoret Biol Phys, Dept Comp Sci, Houston, TX 77030 USA.;Broad Inst & Harvard, Cambridge, MA 02139 USA.;ShanghaiTech, Shanghai Inst Adv Immunochem Studies, ,, Pudong 201210, Peoples R China
-
- Fedrigo, Olivier (author)
- Rockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA
-
- Formenti, Giulio (author)
- Rockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA
-
- Mountcastle, Jacquelyn (author)
- Rockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA
-
- Chow, William (author)
- Welcome Sanger Inst, UK,Welcome Sanger Inst, Tree Life, Cambridge CB10 1SA, England
-
- Martin, Fergal J. (author)
- European Bioinformat Inst, UK,European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England
-
- Ogeh, Denye N. (author)
- European Bioinformat Inst, UK,European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England
-
- Thiaud-Nissen, Francoise (author)
- NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD USA
-
- Howe, Kerstin (author)
- Welcome Sanger Inst, UK,Welcome Sanger Inst, Tree Life, Cambridge CB10 1SA, England
-
- Tracey, Alan (author)
- Welcome Sanger Inst, UK,Welcome Sanger Inst, Tree Life, Cambridge CB10 1SA, England
-
- Smith, Jacqueline (author)
- Univ Edinburgh, UK,Univ Edinburgh, Roslin Inst, Royal Dick Sch Vet Studies, Easter Bush Campus, Roslin EH25 9RG, Midlothian, Scotland
-
- Kuo, Richard I. (author)
- Univ Edinburgh, UK,Univ Edinburgh, Roslin Inst, Royal Dick Sch Vet Studies, Easter Bush Campus, Roslin EH25 9RG, Midlothian, Scotland
-
- Renfree, Marilyn B. (author)
- Univ Melbourne, Sch Biosci, Melbourne, Vic 3052, Australia
-
- Kimura, Takashi (author)
- Hokkaido Univ, Fac Vet Med, Sapporo, Hokkaido 0600818, Japan
-
- Sakoda, Yoshihiro (author)
- Hokkaido Univ, Fac Vet Med, Sapporo, Hokkaido 0600818, Japan
-
- McDougall, Mathew (author)
- New Zealand Fish & Game Eastern Reg, Rotorua 3046, New Zealand
-
- Spencer, Hamish G. (author)
- Univ Otago, Dept Zool, Dunedin 9054, New Zealand
-
- Pyne, Michael (author)
- Currumbin Wildlife Sanctuary, Currumbin, Qld 4223, Australia
-
- Tolf, Conny (author)
- Linnéuniversitetet,Institutionen för biologi och miljö (BOM),Linnaeus Univ, Ctr Ecol & Evolut Microbial Model Syst EEMiS, SE-39182 Kalmar, Sweden
-
- Waldenström, Jonas, 1975- (author)
- Linnéuniversitetet,Institutionen för biologi och miljö (BOM),Linnaeus Univ, Ctr Ecol & Evolut Microbial Model Syst EEMiS, SE-39182 Kalmar, Sweden
-
- Jarvis, Erich D. (author)
- Rockefeller Univ, Vertebrate Genome Lab, New York, NY 10065 USA
-
- Baker, Michelle L. (author)
- Commonwealth Sci & Ind Res Org, Australian Ctr Dis Preparedness, 5 Portarlington Rd, Geelong 3220, Vic, Australia
-
- Burt, David W. (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
- Short, Kirsty R. (author)
- Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia
-
show less...
-
Univ Queensland, Sch Chem & Mol Biosci, St Lucia 4072, Qld, Australia;Commonwealth Sci & Ind Res Org, Australian Ctr Dis Preparedness, 5 Portarlington Rd, Geelong 3220, Vic, Australia Univ Sydney, Sch Life & Environm Sci, Sydney 2006, NSW, Australia (creator_code:org_t)
- 2023-01-23
- 2023
- English.
-
In: Genome Biology. - : BioMed Central (BMC). - 1465-6906 .- 1474-760X. ; 24:1
- Related links:
-
https://doi.org/10.1...
-
show more...
-
https://uu.diva-port... (primary) (Raw object)
-
https://urn.kb.se/re...
-
https://doi.org/10.1...
-
https://urn.kb.se/re...
-
show less...
Abstract
Subject headings
Close
- BackgroundThe Australian black swan (Cygnus atratus) is an iconic species with contrasting plumage to that of the closely related northern hemisphere white swans. The relative geographic isolation of the black swan may have resulted in a limited immune repertoire and increased susceptibility to infectious diseases, notably infectious diseases from which Australia has been largely shielded. Unlike mallard ducks and the mute swan (Cygnus olor), the black swan is extremely sensitive to highly pathogenic avian influenza. Understanding this susceptibility has been impaired by the absence of any available swan genome and transcriptome information.ResultsHere, we generate the first chromosome-length black and mute swan genomes annotated with transcriptome data, all using long-read based pipelines generated for vertebrate species. We use these genomes and transcriptomes to show that unlike other wild waterfowl, black swans lack an expanded immune gene repertoire, lack a key viral pattern-recognition receptor in endothelial cells and mount a poorly controlled inflammatory response to highly pathogenic avian influenza. We also implicate genetic differences in SLC45A2 gene in the iconic plumage of the black swan.ConclusionTogether, these data suggest that the immune system of the black swan is such that should any avian viral infection become established in its native habitat, the black swan would be in a significant peril.
Subject headings
- NATURVETENSKAP -- Biologi -- Ekologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Ecology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Immunologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Immunology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Genetik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Genetics (hsv//eng)
- NATURVETENSKAP -- Biologi -- Zoologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Zoology (hsv//eng)
Keyword
- Genomes
- Virology
- Black swan
- Ecology
- Ekologi
Publication and Content Type
- ref (subject category)
- art (subject category)
Find in a library
To the university's database
- By the author/editor
-
Karawita, Anjana ...
-
Cheng, Yuanyuan
-
Chew, Keng Yih
-
Challagulla, Arj ...
-
Kraus, Robert
-
Mueller, Ralf C.
-
show more...
-
Tong, Marcus Z. ...
-
Hulme, Katina D.
-
Bielefeldt-Ohman ...
-
Steele, Lauren E ...
-
Wu, Melanie
-
Sng, Julian
-
Noye, Ellesandra
-
Bruxner, Timothy ...
-
Au, Gough G.
-
Lowther, Suzanne
-
Blommaert, Julie
-
Suh, Alexander
-
McCauley, Alexan ...
-
Kaur, Parwinder
-
Dudchenko, Olga
-
Aiden, Erez
-
Fedrigo, Olivier
-
Formenti, Giulio
-
Mountcastle, Jac ...
-
Chow, William
-
Martin, Fergal J ...
-
Ogeh, Denye N.
-
Thiaud-Nissen, F ...
-
Howe, Kerstin
-
Tracey, Alan
-
Smith, Jacquelin ...
-
Kuo, Richard I.
-
Renfree, Marilyn ...
-
Kimura, Takashi
-
Sakoda, Yoshihir ...
-
McDougall, Mathe ...
-
Spencer, Hamish ...
-
Pyne, Michael
-
Tolf, Conny
-
Waldenström, Jon ...
-
Jarvis, Erich D.
-
Baker, Michelle ...
-
Burt, David W.
-
Short, Kirsty R.
-
show less...
- About the subject
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Ecology
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Immunology
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Genetics
-
- NATURAL SCIENCES
-
NATURAL SCIENCES
-
and Biological Scien ...
-
and Zoology
- Articles in the publication
-
Genome Biology
- By the university
-
Linnaeus University
-
Uppsala University